Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159899457
Identifier: 159899457
GI number: 159899457
Start: 3713179
End: 3713715
Strand: Direct
Name: 159899457
Synonym: Haur_2938
Alternate gene names: NA
Gene position: 3713179-3713715 (Clockwise)
Preceding gene: 159899456
Following gene: 159899458
Centisome position: 58.51
GC content: 47.67
Gene sequence:
>537_bases ATGGCTAACCAAACGCCGCAACACGATCATTCACATCAATTAAGTGCTTTAGCCGCCCGCGAACGCGAGTTGATCAAACA TTTAATCGAACACCCCACGATTAGCAAAAATACCAATCATCAATTTGAGGCCGACCAAACCTTTGGTGAGCGTTTGGCCG ATCGAGTAGCGGCGTTTGGTGGTTCATGGCCCTTCTTGATCGGCTTTTCCAGTGCTTTGCTCGGTTGGATGCTGCTGAAC GGGCTATTCTTGACCAAACCGTTCGATCCCTATCCCTTTATTTTGTTAAATTTGGTGCTATCGAGCGTTGCAGCCTTGCA AGCGCCAATTATTATGATGTCGCAAAGCCGTCAGGCCGCCAAAGATCGGCTTGATGCCAGCAACGATTATGAAATTAATC TCAAGGCCGAGCTGGAAATTCAGCGCCTGCATAACAAAATTGATGATCTACGCGAAGCTCAATGGCACGAGCTGGTGCAG CTCCAACAAGAGCAAATTCGCTTGCTCAACCAAATTTTAAGCCAACGCCCTGAATAA
Upstream 100 bases:
>100_bases AATTACGACCCGCGCCAATCTCCAAGCAGGCGTAGAATATGCCCTCGCTTGTACTGGCTTTGCAATTCGCCCATTGTAGC GTGGGCAGGGAATTTGGATT
Downstream 100 bases:
>100_bases GCACCCAACTCGTTAACTTTCCGGTTATGTTGCCTTGCCATACTGCTACTATCAATCCTAAAAGGCTTTCAATCCTAGGA GCAAGCAGATGGATGCAGCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 178; Mature: 177
Protein sequence:
>178_residues MANQTPQHDHSHQLSALAARERELIKHLIEHPTISKNTNHQFEADQTFGERLADRVAAFGGSWPFLIGFSSALLGWMLLN GLFLTKPFDPYPFILLNLVLSSVAALQAPIIMMSQSRQAAKDRLDASNDYEINLKAELEIQRLHNKIDDLREAQWHELVQ LQQEQIRLLNQILSQRPE
Sequences:
>Translated_178_residues MANQTPQHDHSHQLSALAARERELIKHLIEHPTISKNTNHQFEADQTFGERLADRVAAFGGSWPFLIGFSSALLGWMLLN GLFLTKPFDPYPFILLNLVLSSVAALQAPIIMMSQSRQAAKDRLDASNDYEINLKAELEIQRLHNKIDDLREAQWHELVQ LQQEQIRLLNQILSQRPE >Mature_177_residues ANQTPQHDHSHQLSALAARERELIKHLIEHPTISKNTNHQFEADQTFGERLADRVAAFGGSWPFLIGFSSALLGWMLLNG LFLTKPFDPYPFILLNLVLSSVAALQAPIIMMSQSRQAAKDRLDASNDYEINLKAELEIQRLHNKIDDLREAQWHELVQL QQEQIRLLNQILSQRPE
Specific function: Unknown
COG id: COG4420
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20384; Mature: 20252
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANQTPQHDHSHQLSALAARERELIKHLIEHPTISKNTNHQFEADQTFGERLADRVAAFG CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC GSWPFLIGFSSALLGWMLLNGLFLTKPFDPYPFILLNLVLSSVAALQAPIIMMSQSRQAA CCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDRLDASNDYEINLKAELEIQRLHNKIDDLREAQWHELVQLQQEQIRLLNQILSQRPE HHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ANQTPQHDHSHQLSALAARERELIKHLIEHPTISKNTNHQFEADQTFGERLADRVAAFG CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC GSWPFLIGFSSALLGWMLLNGLFLTKPFDPYPFILLNLVLSSVAALQAPIIMMSQSRQAA CCCHHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDRLDASNDYEINLKAELEIQRLHNKIDDLREAQWHELVQLQQEQIRLLNQILSQRPE HHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA