| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159897979
Identifier: 159897979
GI number: 159897979
Start: 1692575
End: 1693954
Strand: Reverse
Name: 159897979
Synonym: Haur_1454
Alternate gene names: NA
Gene position: 1693954-1692575 (Counterclockwise)
Preceding gene: 159897981
Following gene: 159897978
Centisome position: 26.69
GC content: 51.3
Gene sequence:
>1380_bases ATGCTCCCACGTTCGACCGTGCGGCGCAGCATGGCATTAATCATTCTAGTAATGCTTTTAACGCTGGTTGTCGCCCGACC CCAAGCTTCTAATGCTGCCGACCCACCAACTTATTATGCTGAAACCGGTCACTACCTTGGTGGTGGTTTCCGCGATTACT GGAATGCCAACGGCGGCTTACAAATTTTTGGCTACCCCATCACTGAAGAATATCGCAACGCACAGGGCAAAACCATTCAA TGGTTTGAACGTGCTCGCTTTGAGTTAGCCAGCAATGGCTCAGTCGAGTTAGGGCTTTTGGGGCGTGAAGCAACCGTTAA TCGGGTGTTTCCGCAAATCCCGCCCCGCGAAAACGATGCCAACCACCGCTACTTCCCCGAAACCAGCCATATGATTATGT GGGGGTTCAAAACCATTTGGGAAACCAAAGGTGGTTTAGGCGTATTTGGCTATCCAATTAGCGAAGAAATGGATGAAATT CTCGCTTCGGATAACAAATGGCATATCGTTCAATATTTCGAGCGTGCTCGCTTTGAATTTTGGCCCGATTACCCTGCGGG GCAACGGGTTGTCGTCAGCGATCTAGGTCGGCGGTTGGCTCCCCGCGAGTTAACCACGCCATTGCCACCAGGCAGCCCTC CAGGCAGTACCCCTCCTGGCGCACCTGGGTTGCCACCAAGCAAAGATGCGATCGTTACGCCAAGCTCTGGGCCTGAAGGG ACAACCTTTGGCTTCAATGGTTTTGGCTTTGTCGCCGGTGAAGAAGTGGTTTTGTGGTTGACCTCACCTGATGGTACAGT CTACCCGGCCAATTCAACAACCTATGCTGATATCGATGGGTCGTTAACCTCATCAGGTATTTATGTCACAATCAGCCAAG GAGTTGGGGTTTGGGCGATTACCGCCCAAGGTCGGCTCAGCGGCCATGCCAGCATTGGCTATTTTGAAGTTACCCGAGCA CCTGAGCAGCCACTGCCCGCCGACTATAATGCACGGGTTGACCCTCGTGAAGGTCGGCAGGATACGATTTACAACTTCTA TGCAGGCGGGTTTGTTCCAGGCGAAGTAGTTGCGGTTGGTGTACTCAACGAATATGACGAACTCGTAACCGAAGTTATTG GCGTTTATGCTGATGGTAATGGCTCAATCGATTATGCCAATATTCGCTTTGTGCCAAACAATTCCTTCGATCCAGGTATT TATGAAATCTATTCCACCAGTGAAAGTGGCCGTGAAGCCTATGCCTTCTTGCGTATGCGCAGCAATAGTGTGACCAGTGT CTCGACCTTAAGCATGCGTCAAGCGCGAACCACCAGCGGTTCATTAGGCCGTGGCGATGGGCTAGCCAGCGAAGGCAATA TCGATTTCTTCCAGAAATAG
Upstream 100 bases:
>100_bases CCCAAGCACTAAACCGTCGGATCGAGACTTGCCAAAAGCCCTAACTATCGGTATACTCAGATTTGAGTTTCTCATTTTAG ATTAATCCTAAGGAGGAGGT
Downstream 100 bases:
>100_bases TTAACAAACCAAGCTTGATCAAAGGGATGAGCAAATGCTCATCCCTTTTTTGTCGCTTCAGCCCGCAGGATGCTATAATG CTGCTACGGTTCGACCGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MLPRSTVRRSMALIILVMLLTLVVARPQASNAADPPTYYAETGHYLGGGFRDYWNANGGLQIFGYPITEEYRNAQGKTIQ WFERARFELASNGSVELGLLGREATVNRVFPQIPPRENDANHRYFPETSHMIMWGFKTIWETKGGLGVFGYPISEEMDEI LASDNKWHIVQYFERARFEFWPDYPAGQRVVVSDLGRRLAPRELTTPLPPGSPPGSTPPGAPGLPPSKDAIVTPSSGPEG TTFGFNGFGFVAGEEVVLWLTSPDGTVYPANSTTYADIDGSLTSSGIYVTISQGVGVWAITAQGRLSGHASIGYFEVTRA PEQPLPADYNARVDPREGRQDTIYNFYAGGFVPGEVVAVGVLNEYDELVTEVIGVYADGNGSIDYANIRFVPNNSFDPGI YEIYSTSESGREAYAFLRMRSNSVTSVSTLSMRQARTTSGSLGRGDGLASEGNIDFFQK
Sequences:
>Translated_459_residues MLPRSTVRRSMALIILVMLLTLVVARPQASNAADPPTYYAETGHYLGGGFRDYWNANGGLQIFGYPITEEYRNAQGKTIQ WFERARFELASNGSVELGLLGREATVNRVFPQIPPRENDANHRYFPETSHMIMWGFKTIWETKGGLGVFGYPISEEMDEI LASDNKWHIVQYFERARFEFWPDYPAGQRVVVSDLGRRLAPRELTTPLPPGSPPGSTPPGAPGLPPSKDAIVTPSSGPEG TTFGFNGFGFVAGEEVVLWLTSPDGTVYPANSTTYADIDGSLTSSGIYVTISQGVGVWAITAQGRLSGHASIGYFEVTRA PEQPLPADYNARVDPREGRQDTIYNFYAGGFVPGEVVAVGVLNEYDELVTEVIGVYADGNGSIDYANIRFVPNNSFDPGI YEIYSTSESGREAYAFLRMRSNSVTSVSTLSMRQARTTSGSLGRGDGLASEGNIDFFQK >Mature_459_residues MLPRSTVRRSMALIILVMLLTLVVARPQASNAADPPTYYAETGHYLGGGFRDYWNANGGLQIFGYPITEEYRNAQGKTIQ WFERARFELASNGSVELGLLGREATVNRVFPQIPPRENDANHRYFPETSHMIMWGFKTIWETKGGLGVFGYPISEEMDEI LASDNKWHIVQYFERARFEFWPDYPAGQRVVVSDLGRRLAPRELTTPLPPGSPPGSTPPGAPGLPPSKDAIVTPSSGPEG TTFGFNGFGFVAGEEVVLWLTSPDGTVYPANSTTYADIDGSLTSSGIYVTISQGVGVWAITAQGRLSGHASIGYFEVTRA PEQPLPADYNARVDPREGRQDTIYNFYAGGFVPGEVVAVGVLNEYDELVTEVIGVYADGNGSIDYANIRFVPNNSFDPGI YEIYSTSESGREAYAFLRMRSNSVTSVSTLSMRQARTTSGSLGRGDGLASEGNIDFFQK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50223; Mature: 50223
Theoretical pI: Translated: 4.69; Mature: 4.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPRSTVRRSMALIILVMLLTLVVARPQASNAADPPTYYAETGHYLGGGFRDYWNANGGL CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCE QIFGYPITEEYRNAQGKTIQWFERARFELASNGSVELGLLGREATVNRVFPQIPPRENDA EEEEECCHHHHHCCCCCEEHHHHHHHHEECCCCCEEEEEECCCHHHHHHCCCCCCCCCCC NHRYFPETSHMIMWGFKTIWETKGGLGVFGYPISEEMDEILASDNKWHIVQYFERARFEF CCCCCCCCCCEEEEEHHHHHHCCCCCEEECCCHHHHHHHHHHCCCCEEHHHHHHHCCCEE WPDYPAGQRVVVSDLGRRLAPRELTTPLPPGSPPGSTPPGAPGLPPSKDAIVTPSSGPEG CCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC TTFGFNGFGFVAGEEVVLWLTSPDGTVYPANSTTYADIDGSLTSSGIYVTISQGVGVWAI CCCCCCCEEEEECCEEEEEEECCCCEEECCCCCEEEECCCCEECCCEEEEEECCCCEEEE TAQGRLSGHASIGYFEVTRAPEQPLPADYNARVDPREGRQDTIYNFYAGGFVPGEVVAVG EECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEE VLNEYDELVTEVIGVYADGNGSIDYANIRFVPNNSFDPGIYEIYSTSESGREAYAFLRMR HHHHHHHHHHHHHEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEC SNSVTSVSTLSMRQARTTSGSLGRGDGLASEGNIDFFQK CCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MLPRSTVRRSMALIILVMLLTLVVARPQASNAADPPTYYAETGHYLGGGFRDYWNANGGL CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCHHHHHCCCCCE QIFGYPITEEYRNAQGKTIQWFERARFELASNGSVELGLLGREATVNRVFPQIPPRENDA EEEEECCHHHHHCCCCCEEHHHHHHHHEECCCCCEEEEEECCCHHHHHHCCCCCCCCCCC NHRYFPETSHMIMWGFKTIWETKGGLGVFGYPISEEMDEILASDNKWHIVQYFERARFEF CCCCCCCCCCEEEEEHHHHHHCCCCCEEECCCHHHHHHHHHHCCCCEEHHHHHHHCCCEE WPDYPAGQRVVVSDLGRRLAPRELTTPLPPGSPPGSTPPGAPGLPPSKDAIVTPSSGPEG CCCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC TTFGFNGFGFVAGEEVVLWLTSPDGTVYPANSTTYADIDGSLTSSGIYVTISQGVGVWAI CCCCCCCEEEEECCEEEEEEECCCCEEECCCCCEEEECCCCEECCCEEEEEECCCCEEEE TAQGRLSGHASIGYFEVTRAPEQPLPADYNARVDPREGRQDTIYNFYAGGFVPGEVVAVG EECCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEE VLNEYDELVTEVIGVYADGNGSIDYANIRFVPNNSFDPGIYEIYSTSESGREAYAFLRMR HHHHHHHHHHHHHEEEECCCCCEEEEEEEEECCCCCCCCEEEEEECCCCCCCEEEEEEEC SNSVTSVSTLSMRQARTTSGSLGRGDGLASEGNIDFFQK CCCCCEEEHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA