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The map label for this gene is potC [H]

Identifier: 159897592

GI number: 159897592

Start: 1215853

End: 1216734

Strand: Direct

Name: potC [H]

Synonym: Haur_1063

Alternate gene names: 159897592

Gene position: 1215853-1216734 (Clockwise)

Preceding gene: 159897591

Following gene: 159897593

Centisome position: 19.16

GC content: 51.13

Gene sequence:

>882_bases
ATGATGGCGAAAATCCTGGCTGATAAGCGCATCGAAACCAAGCACGGGCGTTCGCGCCCAGTGGCCAAACGGCACATGCC
TTGGGGGACATGGGCGCTAACGCTGAATGCGATTTTCGTCTACACCTTCTTGTATGTGCCGATTATTGTGCTGGTGTTGT
TTTCGTTCAACGCGGCCAAAGTTGGGTCGCAATGGCAGGGCTTCACGCTGCAATGGTATAACGAGTTGTTTGCCGATGCC
CGTTTGGGCGATGCCCTCTGGACAAGCCTTAAAATTGCTGGCTCTTCGACCTTGATTGCGACCACAATTGGCACCTTGGC
CGCTTTGGCGCTGGAAAAACGTGGTTGGTGGGGGCGCAAAACCTTTGATACGGCACTTTATCTGCCAGTCATTATTCCTG
ATGTGGTGATGGCTGTCTCGCTCTTAGGGTTCTTTACCTTGGCCTTTCGCCAATTTCAGGCGCTAATCGGCTTAAATTTG
GCCATGGGCTTGTGGACGGTGATTATCTCGCATGTGGCTTTTAATATTTCGTTTGTGACGGTGGTAGTTGGTACAAGTTT
GGCCAATTTTGATCGGCGCTTAGAAGAAGCTGCTGCCGATTTGGGCGCAACCCCATGGCAAACTTTTTGGCGGATCAAGT
TTCCCTTGATTGGGCCTGGGGTTTTGGGCGGCGCATTGCTCTCGTTCACCCTCTCGCTTGATGATTTTGTAGTGACCTTT
TTCACCCGTGGCCCAGGGGTCAACACCTTGACGACCGAGGTCTATGGGCGAATCAAGAAATCGATTTCGCCGGAAATTAA
TGCAATTTCAAGTTTGATGTTACTTGCTTCAACGACCTTGGTTGTGACTTCGTTGTGGATGCAACGCCGTCGCCAAGGCT
AA

Upstream 100 bases:

>100_bases
TCGGCCTCGAATTGGGCCTATGGCTCAGCGATTTCGATGATTTTTATGCTGTTACTCTTGGGCGCAATCTTGCTCTATTT
CAAAGCCACACGGGAGGTGA

Downstream 100 bases:

>100_bases
TTATTGCTATTGGTGTGTTTTAAGGAGTTTGATTGATGAAACTACGTCGCTTTGGGCTGGTGCTCATGGTGTTGAGTTTG
TTGGTGGCCTGTGGCGAAGC

Product: ornithine carbamoyltransferase

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MMAKILADKRIETKHGRSRPVAKRHMPWGTWALTLNAIFVYTFLYVPIIVLVLFSFNAAKVGSQWQGFTLQWYNELFADA
RLGDALWTSLKIAGSSTLIATTIGTLAALALEKRGWWGRKTFDTALYLPVIIPDVVMAVSLLGFFTLAFRQFQALIGLNL
AMGLWTVIISHVAFNISFVTVVVGTSLANFDRRLEEAAADLGATPWQTFWRIKFPLIGPGVLGGALLSFTLSLDDFVVTF
FTRGPGVNTLTTEVYGRIKKSISPEINAISSLMLLASTTLVVTSLWMQRRRQG

Sequences:

>Translated_293_residues
MMAKILADKRIETKHGRSRPVAKRHMPWGTWALTLNAIFVYTFLYVPIIVLVLFSFNAAKVGSQWQGFTLQWYNELFADA
RLGDALWTSLKIAGSSTLIATTIGTLAALALEKRGWWGRKTFDTALYLPVIIPDVVMAVSLLGFFTLAFRQFQALIGLNL
AMGLWTVIISHVAFNISFVTVVVGTSLANFDRRLEEAAADLGATPWQTFWRIKFPLIGPGVLGGALLSFTLSLDDFVVTF
FTRGPGVNTLTTEVYGRIKKSISPEINAISSLMLLASTTLVVTSLWMQRRRQG
>Mature_293_residues
MMAKILADKRIETKHGRSRPVAKRHMPWGTWALTLNAIFVYTFLYVPIIVLVLFSFNAAKVGSQWQGFTLQWYNELFADA
RLGDALWTSLKIAGSSTLIATTIGTLAALALEKRGWWGRKTFDTALYLPVIIPDVVMAVSLLGFFTLAFRQFQALIGLNL
AMGLWTVIISHVAFNISFVTVVVGTSLANFDRRLEEAAADLGATPWQTFWRIKFPLIGPGVLGGALLSFTLSLDDFVVTF
FTRGPGVNTLTTEVYGRIKKSISPEINAISSLMLLASTTLVVTSLWMQRRRQG

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=237, Percent_Identity=38.3966244725738, Blast_Score=165, Evalue=3e-42,
Organism=Escherichia coli, GI1787081, Length=256, Percent_Identity=38.671875, Blast_Score=158, Evalue=3e-40,
Organism=Escherichia coli, GI1787714, Length=254, Percent_Identity=32.6771653543307, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788764, Length=206, Percent_Identity=27.1844660194175, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32484; Mature: 32484

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMAKILADKRIETKHGRSRPVAKRHMPWGTWALTLNAIFVYTFLYVPIIVLVLFSFNAAK
CCHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VGSQWQGFTLQWYNELFADARLGDALWTSLKIAGSSTLIATTIGTLAALALEKRGWWGRK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCC
TFDTALYLPVIIPDVVMAVSLLGFFTLAFRQFQALIGLNLAMGLWTVIISHVAFNISFVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVVGTSLANFDRRLEEAAADLGATPWQTFWRIKFPLIGPGVLGGALLSFTLSLDDFVVTF
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
FTRGPGVNTLTTEVYGRIKKSISPEINAISSLMLLASTTLVVTSLWMQRRRQG
HCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MMAKILADKRIETKHGRSRPVAKRHMPWGTWALTLNAIFVYTFLYVPIIVLVLFSFNAAK
CCHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
VGSQWQGFTLQWYNELFADARLGDALWTSLKIAGSSTLIATTIGTLAALALEKRGWWGRK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHCCCCCCC
TFDTALYLPVIIPDVVMAVSLLGFFTLAFRQFQALIGLNLAMGLWTVIISHVAFNISFVT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VVVGTSLANFDRRLEEAAADLGATPWQTFWRIKFPLIGPGVLGGALLSFTLSLDDFVVTF
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
FTRGPGVNTLTTEVYGRIKKSISPEINAISSLMLLASTTLVVTSLWMQRRRQG
HCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]