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The map label for this gene is rtcB [H]

Identifier: 159897341

GI number: 159897341

Start: 920575

End: 921750

Strand: Reverse

Name: rtcB [H]

Synonym: Haur_0812

Alternate gene names: 159897341

Gene position: 921750-920575 (Counterclockwise)

Preceding gene: 159897342

Following gene: 159897340

Centisome position: 14.52

GC content: 52.55

Gene sequence:

>1176_bases
GTGCAGTACGTTGAGAACATTCCAATCTGGGGCGATCCAATCGATCAAGGAGCCTTGAGCCAGATTAAAACCTGTGCGCT
TGAGGCCGATGCAGTGGCGTTGATGGCAGATCATCATAAGGGCTATGCGGTGCCAATTGGCGGCGTAGTCGCTTATCGTG
ATGCAATTAGTCCTTCCGGCGTTGGCTACGATATCGCTTGCGGCAACAAAGCCGTCTTGCTCGATCTGCCAGCCAGCGAA
GTTCGCGCTAAAATCAAGCCGATTATGGACGACATCTGGCGTTCGTTGTCGTTTGGGGTTGGCCTGAACAACCGCCAAAG
CGTTGATCACGACTTGTTTGACGACCCAGCTTGGCAAGTTCCAGCGGTCAAAAGCTTGAAACAAACTGCCCGCAATCAGC
TTGGCACAATTGGCTCAGGCAATCATTATGTCGATTTATTCGCTGATGAGCTTGATCGGACATGGATTGGCGTGCACTTT
GGCTCGCGAGGCTTAGGCCACAAAACCGCGACCTATTTTTTAGAGGCAGGCGGGGCCAAAGATGGCATGGATGTTGCGCC
GTTGATTTTGCCAACTGCCTCGGATTTGGGCGAGCAATATTTGAGTTGTATGGCCTTGGCTGGGCGCTATGCCTACGCTG
GCCGCGATTGGGTTTGTGCTGAGGTTGCCCGCATTTTAGGCGCAACTATCCTTGAAGAAGTGCATAATCACCATAATTTT
GCTTGGCGCGAAACTCACAACGGCGTGGATTTGTGGGTAGTCCGCAAGGGTGCAACGCCCGCCTTTCCTGGTCAGCGTGG
CTTTGTTGGCGGCTCCATGGGCGATATTTCGGTTATTTTAGAAGGCGTTGACTCGCCCGAAGCCCAAACTGCCTTGCATT
CAACCGTGCATGGCGCTGGTCGGGTGATGAGCCGCACCGCTGCTCGCGGCAAAATTAATTATCGCACGGGCAAAGTGATT
GCACCTGGCAAAATTTCGCGCGAGATGATGAATGAGTGGATTCAACAGCAAGGGGTTGAATTACGTGGCGCAGGCACTGA
TGAATCGCCCCATTGCTACAAACGATTGCCTGAGGTGCTCAACCACCACGCCAATACAATCAAGATTGTACATACCTTGC
AGCCGCTGGGCGTAGCAATGGCTGGTGAAAACGAGTTTGATCCGTATAAGGATTGA

Upstream 100 bases:

>100_bases
TTGCCGCCTAAAATAATCATCCCTACGAACGAGCAAATGTTAAACTGGGCTATGCTATGCTATAGCCCAATTTTGTTTTA
AGCGATAGGAGAGCAGATTC

Downstream 100 bases:

>100_bases
TCGTTAGTTTTTAACCACGAAGGACACGAAGGGCACGAAGAAGTAGGGCTATTGGCTATTGGCTATTGGAATATTTCAAT
GGTCGATAGCCTTTTTTTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MQYVENIPIWGDPIDQGALSQIKTCALEADAVALMADHHKGYAVPIGGVVAYRDAISPSGVGYDIACGNKAVLLDLPASE
VRAKIKPIMDDIWRSLSFGVGLNNRQSVDHDLFDDPAWQVPAVKSLKQTARNQLGTIGSGNHYVDLFADELDRTWIGVHF
GSRGLGHKTATYFLEAGGAKDGMDVAPLILPTASDLGEQYLSCMALAGRYAYAGRDWVCAEVARILGATILEEVHNHHNF
AWRETHNGVDLWVVRKGATPAFPGQRGFVGGSMGDISVILEGVDSPEAQTALHSTVHGAGRVMSRTAARGKINYRTGKVI
APGKISREMMNEWIQQQGVELRGAGTDESPHCYKRLPEVLNHHANTIKIVHTLQPLGVAMAGENEFDPYKD

Sequences:

>Translated_391_residues
MQYVENIPIWGDPIDQGALSQIKTCALEADAVALMADHHKGYAVPIGGVVAYRDAISPSGVGYDIACGNKAVLLDLPASE
VRAKIKPIMDDIWRSLSFGVGLNNRQSVDHDLFDDPAWQVPAVKSLKQTARNQLGTIGSGNHYVDLFADELDRTWIGVHF
GSRGLGHKTATYFLEAGGAKDGMDVAPLILPTASDLGEQYLSCMALAGRYAYAGRDWVCAEVARILGATILEEVHNHHNF
AWRETHNGVDLWVVRKGATPAFPGQRGFVGGSMGDISVILEGVDSPEAQTALHSTVHGAGRVMSRTAARGKINYRTGKVI
APGKISREMMNEWIQQQGVELRGAGTDESPHCYKRLPEVLNHHANTIKIVHTLQPLGVAMAGENEFDPYKD
>Mature_391_residues
MQYVENIPIWGDPIDQGALSQIKTCALEADAVALMADHHKGYAVPIGGVVAYRDAISPSGVGYDIACGNKAVLLDLPASE
VRAKIKPIMDDIWRSLSFGVGLNNRQSVDHDLFDDPAWQVPAVKSLKQTARNQLGTIGSGNHYVDLFADELDRTWIGVHF
GSRGLGHKTATYFLEAGGAKDGMDVAPLILPTASDLGEQYLSCMALAGRYAYAGRDWVCAEVARILGATILEEVHNHHNF
AWRETHNGVDLWVVRKGATPAFPGQRGFVGGSMGDISVILEGVDSPEAQTALHSTVHGAGRVMSRTAARGKINYRTGKVI
APGKISREMMNEWIQQQGVELRGAGTDESPHCYKRLPEVLNHHANTIKIVHTLQPLGVAMAGENEFDPYKD

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=432, Percent_Identity=27.7777777777778, Blast_Score=112, Evalue=5e-25,
Organism=Escherichia coli, GI2367224, Length=413, Percent_Identity=29.0556900726392, Blast_Score=152, Evalue=3e-38,
Organism=Caenorhabditis elegans, GI17506665, Length=437, Percent_Identity=28.3752860411899, Blast_Score=111, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24585217, Length=432, Percent_Identity=27.3148148148148, Blast_Score=103, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 42397; Mature: 42397

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYVENIPIWGDPIDQGALSQIKTCALEADAVALMADHHKGYAVPIGGVVAYRDAISPSG
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCEEEHHCCCCCCC
VGYDIACGNKAVLLDLPASEVRAKIKPIMDDIWRSLSFGVGLNNRQSVDHDLFDDPAWQV
CCEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PAVKSLKQTARNQLGTIGSGNHYVDLFADELDRTWIGVHFGSRGLGHKTATYFLEAGGAK
HHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCEEEEEEECCCCCCCHHEEEEEECCCCC
DGMDVAPLILPTASDLGEQYLSCMALAGRYAYAGRDWVCAEVARILGATILEEVHNHHNF
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
AWRETHNGVDLWVVRKGATPAFPGQRGFVGGSMGDISVILEGVDSPEAQTALHSTVHGAG
EEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHH
RVMSRTAARGKINYRTGKVIAPGKISREMMNEWIQQQGVELRGAGTDESPHCYKRLPEVL
HHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHH
NHHANTIKIVHTLQPLGVAMAGENEFDPYKD
HCCCCEEEEEEECCCCCEEECCCCCCCCCCC
>Mature Secondary Structure
MQYVENIPIWGDPIDQGALSQIKTCALEADAVALMADHHKGYAVPIGGVVAYRDAISPSG
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCEEEHHCCCCCCC
VGYDIACGNKAVLLDLPASEVRAKIKPIMDDIWRSLSFGVGLNNRQSVDHDLFDDPAWQV
CCEEEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
PAVKSLKQTARNQLGTIGSGNHYVDLFADELDRTWIGVHFGSRGLGHKTATYFLEAGGAK
HHHHHHHHHHHHHCCCCCCCCEEEEEEHHCCCCEEEEEEECCCCCCCHHEEEEEECCCCC
DGMDVAPLILPTASDLGEQYLSCMALAGRYAYAGRDWVCAEVARILGATILEEVHNHHNF
CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCE
AWRETHNGVDLWVVRKGATPAFPGQRGFVGGSMGDISVILEGVDSPEAQTALHSTVHGAG
EEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHEECCCCCHHHHHHHHHHHHHH
RVMSRTAARGKINYRTGKVIAPGKISREMMNEWIQQQGVELRGAGTDESPHCYKRLPEVL
HHHHHHHHCCEEEECCCCEECCCHHHHHHHHHHHHHCCCEEECCCCCCCCHHHHHHHHHH
NHHANTIKIVHTLQPLGVAMAGENEFDPYKD
HCCCCEEEEEEECCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]