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The map label for this gene is ycdT [C]

Identifier: 159897326

GI number: 159897326

Start: 900212

End: 901438

Strand: Reverse

Name: ycdT [C]

Synonym: Haur_0797

Alternate gene names: 159897326

Gene position: 901438-900212 (Counterclockwise)

Preceding gene: 159897327

Following gene: 159897320

Centisome position: 14.2

GC content: 47.51

Gene sequence:

>1227_bases
ATGGCGCTTGACCAGCCAACAGTTGCCTTAATTGTCGGAATTGGCTTGTTGCTCCAAGCATTGGTGATTGGGGCTTTTTT
AGTCTTTGTGCGGCGCTATCAAGGGATTCGCTGCTTCTTGATTGGCACAATTGGCTTGGGTTTGGGCTTTTTAGCCTTGG
CGTTATTGCCTCAAACCTCAATCGTAGCAATCACAAGTAGTTATATTCTGATTCTCAGTGGCTTGTTTGGGCTAAGCAGT
GGCATTTTACGCTTCATTGGAGCCGCCAGCTCAGCCAAAATTTATGCGATCTGCTGGCTAATCGTTGCTAGCATGCTCAG
TCTGTGCGCATGGTTGTTTGCCGATTCAGGCTTAATTATCAATTTGGCGATGCTGATCGGGAGTGCTGGCATGGCCTATA
CTGCGCTCCAGGTGTTTTTCCAGCGTACCATCCCGTATCAAAGTGCTAGCCGTTTGTTGGCTTTAGCCTTGACCCTCAAA
ATGGCATTTGTTGTTTTGGGATTGGCCTATTTTTGGTATAGCCAACGCTGGCCTAGCCTGACGACGTTGAAATTAGGCTA
TAGCGTGTTGATTTTGCTGCTTTCGTTGCTGTGGACTGGTGGCTTTGCGGTAATGATTACCCAACGCATGCAATGTGATT
TATCGGCCTTAGCCAGTATTGATGTCTTAACTGGCATCGCCAATCGCCGCGCAATCAACGAATATTTAGAGCAGGCAATT
GCCAAATGGCGGCGCAACCAGCAGGGTTTTGCGGTAATCATGCTCGATATTGATTGTTTTAAGCAGATTAATGATCGCTA
TGGTCACCACGCGGGCGATTCCGTGTTACGCCATATTGCCTTGGTGCTGAGCGAACAAGTGCGTATTAATGATCTGATTG
GGCGCTGGGGTGGTGAAGAGTTTCTATTAATTGTTGATGCCGACACGATTCAGCAGGCAACACTGATGGCTGAACGCTTA
CGTCAAGCTATTCAGCAACAGCCAACCGTCTGGAATGATCAGGTGATTCAGCATACAGTCAGCATTGGGATTGCGGTCTG
TGGAATGCATGGCTTCAACGAAGCCCAATTGCTGACTGCTGCCGATTTAGCACTCTACGAGGCCAAGGAAACAGGTAAAA
ATCGCTGGATTGTCTATGAGCGCCGTTTGTTGAACCAACTTGATCCAACCCTAGAACTGGCCAACGAAGGACTTATTTTC
GATGTTGATTCATCGATTTATGCCTAA

Upstream 100 bases:

>100_bases
CATATTGTGGTCCTGGCTTTGGCAACTCCTGCTAACTCCGCAGCCAACCGCGATGAGTGCGTTAGTTTTGGCTATTGACC
CAACTTGCGGAGGTAGTGGC

Downstream 100 bases:

>100_bases
TGCGCTGGCTGGGCTTGCGGTTCAGGGCTAGGCAAGCCAACCGCAATTAATGCGCCTGCCACAACCAACACGCTGCCCAT
CAGGTAGGGCGAGGCTTCGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MALDQPTVALIVGIGLLLQALVIGAFLVFVRRYQGIRCFLIGTIGLGLGFLALALLPQTSIVAITSSYILILSGLFGLSS
GILRFIGAASSAKIYAICWLIVASMLSLCAWLFADSGLIINLAMLIGSAGMAYTALQVFFQRTIPYQSASRLLALALTLK
MAFVVLGLAYFWYSQRWPSLTTLKLGYSVLILLLSLLWTGGFAVMITQRMQCDLSALASIDVLTGIANRRAINEYLEQAI
AKWRRNQQGFAVIMLDIDCFKQINDRYGHHAGDSVLRHIALVLSEQVRINDLIGRWGGEEFLLIVDADTIQQATLMAERL
RQAIQQQPTVWNDQVIQHTVSIGIAVCGMHGFNEAQLLTAADLALYEAKETGKNRWIVYERRLLNQLDPTLELANEGLIF
DVDSSIYA

Sequences:

>Translated_408_residues
MALDQPTVALIVGIGLLLQALVIGAFLVFVRRYQGIRCFLIGTIGLGLGFLALALLPQTSIVAITSSYILILSGLFGLSS
GILRFIGAASSAKIYAICWLIVASMLSLCAWLFADSGLIINLAMLIGSAGMAYTALQVFFQRTIPYQSASRLLALALTLK
MAFVVLGLAYFWYSQRWPSLTTLKLGYSVLILLLSLLWTGGFAVMITQRMQCDLSALASIDVLTGIANRRAINEYLEQAI
AKWRRNQQGFAVIMLDIDCFKQINDRYGHHAGDSVLRHIALVLSEQVRINDLIGRWGGEEFLLIVDADTIQQATLMAERL
RQAIQQQPTVWNDQVIQHTVSIGIAVCGMHGFNEAQLLTAADLALYEAKETGKNRWIVYERRLLNQLDPTLELANEGLIF
DVDSSIYA
>Mature_407_residues
ALDQPTVALIVGIGLLLQALVIGAFLVFVRRYQGIRCFLIGTIGLGLGFLALALLPQTSIVAITSSYILILSGLFGLSSG
ILRFIGAASSAKIYAICWLIVASMLSLCAWLFADSGLIINLAMLIGSAGMAYTALQVFFQRTIPYQSASRLLALALTLKM
AFVVLGLAYFWYSQRWPSLTTLKLGYSVLILLLSLLWTGGFAVMITQRMQCDLSALASIDVLTGIANRRAINEYLEQAIA
KWRRNQQGFAVIMLDIDCFKQINDRYGHHAGDSVLRHIALVLSEQVRINDLIGRWGGEEFLLIVDADTIQQATLMAERLR
QAIQQQPTVWNDQVIQHTVSIGIAVCGMHGFNEAQLLTAADLALYEAKETGKNRWIVYERRLLNQLDPTLELANEGLIFD
VDSSIYA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=35.9281437125749, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1787802, Length=208, Percent_Identity=31.7307692307692, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI1788381, Length=177, Percent_Identity=32.2033898305085, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI87082007, Length=168, Percent_Identity=36.9047619047619, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=35.031847133758, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=36.4705882352941, Blast_Score=99, Evalue=7e-22,
Organism=Escherichia coli, GI1788085, Length=177, Percent_Identity=35.5932203389831, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787541, Length=181, Percent_Identity=33.1491712707182, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787816, Length=180, Percent_Identity=33.8888888888889, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=31.7073170731707, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87081977, Length=165, Percent_Identity=30.9090909090909, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI87081974, Length=159, Percent_Identity=30.188679245283, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 44983; Mature: 44851

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALDQPTVALIVGIGLLLQALVIGAFLVFVRRYQGIRCFLIGTIGLGLGFLALALLPQTS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCH
IVAITSSYILILSGLFGLSSGILRFIGAASSAKIYAICWLIVASMLSLCAWLFADSGLII
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
NLAMLIGSAGMAYTALQVFFQRTIPYQSASRLLALALTLKMAFVVLGLAYFWYSQRWPSL
HHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TTLKLGYSVLILLLSLLWTGGFAVMITQRMQCDLSALASIDVLTGIANRRAINEYLEQAI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKWRRNQQGFAVIMLDIDCFKQINDRYGHHAGDSVLRHIALVLSEQVRINDLIGRWGGEE
HHHHCCCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
FLLIVDADTIQQATLMAERLRQAIQQQPTVWNDQVIQHTVSIGIAVCGMHGFNEAQLLTA
EEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ADLALYEAKETGKNRWIVYERRLLNQLDPTLELANEGLIFDVDSSIYA
HHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHCCCEEEECCCCCCC
>Mature Secondary Structure 
ALDQPTVALIVGIGLLLQALVIGAFLVFVRRYQGIRCFLIGTIGLGLGFLALALLPQTS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHCCCCH
IVAITSSYILILSGLFGLSSGILRFIGAASSAKIYAICWLIVASMLSLCAWLFADSGLII
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
NLAMLIGSAGMAYTALQVFFQRTIPYQSASRLLALALTLKMAFVVLGLAYFWYSQRWPSL
HHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TTLKLGYSVLILLLSLLWTGGFAVMITQRMQCDLSALASIDVLTGIANRRAINEYLEQAI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKWRRNQQGFAVIMLDIDCFKQINDRYGHHAGDSVLRHIALVLSEQVRINDLIGRWGGEE
HHHHCCCCCCEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
FLLIVDADTIQQATLMAERLRQAIQQQPTVWNDQVIQHTVSIGIAVCGMHGFNEAQLLTA
EEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ADLALYEAKETGKNRWIVYERRLLNQLDPTLELANEGLIFDVDSSIYA
HHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]