| Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
|---|---|
| Accession | NC_009972 |
| Length | 6,346,587 |
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The map label for this gene is 159897317
Identifier: 159897317
GI number: 159897317
Start: 889415
End: 891352
Strand: Reverse
Name: 159897317
Synonym: Haur_0788
Alternate gene names: NA
Gene position: 891352-889415 (Counterclockwise)
Preceding gene: 159897320
Following gene: 159897316
Centisome position: 14.04
GC content: 49.43
Gene sequence:
>1938_bases GTGGTTCGTCGTTTTTTTCGTTGTAGTTTGCTGCTGATGCTGGCCGTTGGAGCAATCGCTAGCCAGCATGCCACCCCGCT GGCCGCCCAAAGCCCTCAGTCAAGCCCAAGCCAATTGGCAATTCGTGGTCAACTTGGCGGTGATAGCTCAACCATGGTCG TTGCCGAACAAGCTGCTTATGTTGGCATCGGTCCACGGGTCGTAACCTACGATTTGCACAATCCCAATCAGCCAAATCTA GCCAACCAAAGCAGCCTTTTACCCGCCACCGTGCAAGATTTGGCCTTAGGCGAGGGCTATTTGTACGCCGCCTTGGGCTA TGGCCGTGAACATGGCTTGGCTACATTTTCCTTAGCCACTCCATTAACACCAACGCTTGTAAGTTTTTACCCGCTTGAAT TATCGGCCATGAGTGTTTTCAGCTATCAAGATTATGTCTATGTGCAAGTTGATGATGGCTTGCAGGTGTTCGATTTGAGC AATCCTAGCCAACCACAATTGGTCAATCAACTTAATCAATATGGCATTGCCGCCGCAACGGTTCAAGGCGATCATGTGTA TCTCAATATTCAATCGTGGCTTTCGGGCTTCGATAGCTTGAATATCGTCGATTTGAGCACACCCATGACTCCAACGCTCA AAGGTTCGATCGTGCTTGGCGATATTTTAGATATCGAAATTGCCGCTAATTATGCGTATGTCAATACTCAAATGGGCCTG CGGGTGGTTGATATCAGCAATGGCAGCAACCCAAACATTATCAACCAAACCGATGATGTTGCTGGATTACAACTAACCGC AAGTGGCAACACACTCACAATGATTGGGCTAGATTATGCCTTACACACGTGGGATATTACCAACCCAATCACGCCGACCG AAATTGCTGCCAGCTCCGAAACGGTGCTTGGCTGGCCAACAGCCTTAATTGCCCAACAAAACCTTGGCTATGTGCTGACT CGTTCAGGCCAAATTAATGTCTTCGATTGGAGCACTCGCCAAGCTCCCACGCGCATCAGTGCGACTGAAACCCCTGGCTG CAAGGAAAATGTAGCCTTGCAAGTGGTTGGCGATTATGCCTATGTGGCCGATTGGGGCCGTGGTTTGTGCATTGTTGATG TGCGCAATCCCCAACAACCAAGCGTGATTGGCCGCTTCGATTTAACCACCGATCGCAACGCCGTCACCGATATTGCCGTC CAAGGCTCGTTGGTATATATGGTCGATTGGAGCCACGGAATTTATGTGATCGATGTCAGCGACCCAACCGAACCAACTCA AGTCAGTTTCTTTGCAACCGCTGGCTTTCCAGCAGCAATTGCGGTCAATGGCCCGATGGTCTATGTTGGCGAATCGATCA ACGATCAAGGCGTTGGTGGCAGTGTACGGATTTTCGATCTCAGCGATTTGGCCAATCCAGTTGAGCATAGTCAGTTCTAC ACCAGCAAAGTCGCCCAATTAGCCGTGATCGATCAAACCGTGTATGTGGCCGACAACGAAGGCGGCCTGCGGATTCTCGA TGTTAGCAATCCTGATAACATTCAGATGATCGGCCAATATGCTGAAAATTGGTTCGCCATGGATTTAGCGATTCAGGATG AGTATGTGTATTTGGCGACGACTAGCGGCTTAGAAATTGTCGATATCAGCAACCCCAGCCAACCAATCCCAGCAGGCCGC CTTGGCGATCGCTTGATTGATGGCATCGTTGTGGCGGGCGATAATGCGTATATTGGTGAAAATGGTAGCATTCGCCAAAT CGATATCAGCCAACCGAGCAACCCTCAAGTTGTAGCCGAAACCCTGCTAGCTCGCGATTCATGGATTCTACCAGCGCTGC ATGGTGGAGAGATTGTAGGCTTGAGCTATCATGGTGGTGGCATGTTCGTACTTGAGCCAGAATATCAATTATTTTTGCCT GTAATCAGCAAAAACTAA
Upstream 100 bases:
>100_bases ACGCTGTTTTGAGCGAAGCACGAGGGGAATTTGGTTGCGGTTAACACCAGATCCTCATTCTTGACGCAGTATTCGGGACA TATTGCCTTTGGAGGTACGA
Downstream 100 bases:
>100_bases TTAAGCATTGAATAACGAACTGCTGGCGCATAATCTGCTATGGATATGCGCCAGCAGTGCTTTTTTAAGCATTTTGCTTA ACACTTGCTTATTTTGATTA
Product: LVIVD repeat-containing protein
Products: NA
Alternate protein names: Outer Membrane Adhesin Like Proteiin; LVIVD Repeat Protein; Peptidase M; Lipoprotein
Number of amino acids: Translated: 645; Mature: 645
Protein sequence:
>645_residues MVRRFFRCSLLLMLAVGAIASQHATPLAAQSPQSSPSQLAIRGQLGGDSSTMVVAEQAAYVGIGPRVVTYDLHNPNQPNL ANQSSLLPATVQDLALGEGYLYAALGYGREHGLATFSLATPLTPTLVSFYPLELSAMSVFSYQDYVYVQVDDGLQVFDLS NPSQPQLVNQLNQYGIAAATVQGDHVYLNIQSWLSGFDSLNIVDLSTPMTPTLKGSIVLGDILDIEIAANYAYVNTQMGL RVVDISNGSNPNIINQTDDVAGLQLTASGNTLTMIGLDYALHTWDITNPITPTEIAASSETVLGWPTALIAQQNLGYVLT RSGQINVFDWSTRQAPTRISATETPGCKENVALQVVGDYAYVADWGRGLCIVDVRNPQQPSVIGRFDLTTDRNAVTDIAV QGSLVYMVDWSHGIYVIDVSDPTEPTQVSFFATAGFPAAIAVNGPMVYVGESINDQGVGGSVRIFDLSDLANPVEHSQFY TSKVAQLAVIDQTVYVADNEGGLRILDVSNPDNIQMIGQYAENWFAMDLAIQDEYVYLATTSGLEIVDISNPSQPIPAGR LGDRLIDGIVVAGDNAYIGENGSIRQIDISQPSNPQVVAETLLARDSWILPALHGGEIVGLSYHGGGMFVLEPEYQLFLP VISKN
Sequences:
>Translated_645_residues MVRRFFRCSLLLMLAVGAIASQHATPLAAQSPQSSPSQLAIRGQLGGDSSTMVVAEQAAYVGIGPRVVTYDLHNPNQPNL ANQSSLLPATVQDLALGEGYLYAALGYGREHGLATFSLATPLTPTLVSFYPLELSAMSVFSYQDYVYVQVDDGLQVFDLS NPSQPQLVNQLNQYGIAAATVQGDHVYLNIQSWLSGFDSLNIVDLSTPMTPTLKGSIVLGDILDIEIAANYAYVNTQMGL RVVDISNGSNPNIINQTDDVAGLQLTASGNTLTMIGLDYALHTWDITNPITPTEIAASSETVLGWPTALIAQQNLGYVLT RSGQINVFDWSTRQAPTRISATETPGCKENVALQVVGDYAYVADWGRGLCIVDVRNPQQPSVIGRFDLTTDRNAVTDIAV QGSLVYMVDWSHGIYVIDVSDPTEPTQVSFFATAGFPAAIAVNGPMVYVGESINDQGVGGSVRIFDLSDLANPVEHSQFY TSKVAQLAVIDQTVYVADNEGGLRILDVSNPDNIQMIGQYAENWFAMDLAIQDEYVYLATTSGLEIVDISNPSQPIPAGR LGDRLIDGIVVAGDNAYIGENGSIRQIDISQPSNPQVVAETLLARDSWILPALHGGEIVGLSYHGGGMFVLEPEYQLFLP VISKN >Mature_645_residues MVRRFFRCSLLLMLAVGAIASQHATPLAAQSPQSSPSQLAIRGQLGGDSSTMVVAEQAAYVGIGPRVVTYDLHNPNQPNL ANQSSLLPATVQDLALGEGYLYAALGYGREHGLATFSLATPLTPTLVSFYPLELSAMSVFSYQDYVYVQVDDGLQVFDLS NPSQPQLVNQLNQYGIAAATVQGDHVYLNIQSWLSGFDSLNIVDLSTPMTPTLKGSIVLGDILDIEIAANYAYVNTQMGL RVVDISNGSNPNIINQTDDVAGLQLTASGNTLTMIGLDYALHTWDITNPITPTEIAASSETVLGWPTALIAQQNLGYVLT RSGQINVFDWSTRQAPTRISATETPGCKENVALQVVGDYAYVADWGRGLCIVDVRNPQQPSVIGRFDLTTDRNAVTDIAV QGSLVYMVDWSHGIYVIDVSDPTEPTQVSFFATAGFPAAIAVNGPMVYVGESINDQGVGGSVRIFDLSDLANPVEHSQFY TSKVAQLAVIDQTVYVADNEGGLRILDVSNPDNIQMIGQYAENWFAMDLAIQDEYVYLATTSGLEIVDISNPSQPIPAGR LGDRLIDGIVVAGDNAYIGENGSIRQIDISQPSNPQVVAETLLARDSWILPALHGGEIVGLSYHGGGMFVLEPEYQLFLP VISKN
Specific function: Unknown
COG id: COG5276
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69348; Mature: 69348
Theoretical pI: Translated: 4.02; Mature: 4.02
Prosite motif: PS00012 PHOSPHOPANTETHEINE ; PS00678 WD_REPEATS_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVRRFFRCSLLLMLAVGAIASQHATPLAAQSPQSSPSQLAIRGQLGGDSSTMVVAEQAAY CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCEE VGIGPRVVTYDLHNPNQPNLANQSSLLPATVQDLALGEGYLYAALGYGREHGLATFSLAT EECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEECC PLTPTLVSFYPLELSAMSVFSYQDYVYVQVDDGLQVFDLSNPSQPQLVNQLNQYGIAAAT CCCCHHHEEEEEEEEEEEEEEECCEEEEEECCCEEEEECCCCCCCHHHHHHHHCCEEEEE VQGDHVYLNIQSWLSGFDSLNIVDLSTPMTPTLKGSIVLGDILDIEIAANYAYVNTQMGL EECCEEEEEHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEEEECCCE RVVDISNGSNPNIINQTDDVAGLQLTASGNTLTMIGLDYALHTWDITNPITPTEIAASSE EEEEECCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEEECCCCCCCHHCCCCCC TVLGWPTALIAQQNLGYVLTRSGQINVFDWSTRQAPTRISATETPGCKENVALQVVGDYA EEEECCCCEEECCCCCEEEEECCEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEEECEE YVADWGRGLCIVDVRNPQQPSVIGRFDLTTDRNAVTDIAVQGSLVYMVDWSHGIYVIDVS EEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECC DPTEPTQVSFFATAGFPAAIAVNGPMVYVGESINDQGVGGSVRIFDLSDLANPVEHSQFY CCCCCCEEEEEEECCCCEEEEECCCEEEEECCCCCCCCCCEEEEEEHHHHCCHHHHHHHH TSKVAQLAVIDQTVYVADNEGGLRILDVSNPDNIQMIGQYAENWFAMDLAIQDEYVYLAT HHHHEEEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCEEEEEEEEECCEEEEEE TSGLEIVDISNPSQPIPAGRLGDRLIDGIVVAGDNAYIGENGSIRQIDISQPSNPQVVAE CCCEEEEECCCCCCCCCCCHHHHHHHCCEEEECCCEEECCCCCEEEEECCCCCCCHHHHH TLLARDSWILPALHGGEIVGLSYHGGGMFVLEPEYQLFLPVISKN HHHHCCCEEEEEECCCEEEEEEECCCEEEEECCCCEEEEEEECCC >Mature Secondary Structure MVRRFFRCSLLLMLAVGAIASQHATPLAAQSPQSSPSQLAIRGQLGGDSSTMVVAEQAAY CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCEEEEEECCEE VGIGPRVVTYDLHNPNQPNLANQSSLLPATVQDLALGEGYLYAALGYGREHGLATFSLAT EECCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCEEEEEECC PLTPTLVSFYPLELSAMSVFSYQDYVYVQVDDGLQVFDLSNPSQPQLVNQLNQYGIAAAT CCCCHHHEEEEEEEEEEEEEEECCEEEEEECCCEEEEECCCCCCCHHHHHHHHCCEEEEE VQGDHVYLNIQSWLSGFDSLNIVDLSTPMTPTLKGSIVLGDILDIEIAANYAYVNTQMGL EECCEEEEEHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEEEEEEEEEEEECCCE RVVDISNGSNPNIINQTDDVAGLQLTASGNTLTMIGLDYALHTWDITNPITPTEIAASSE EEEEECCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEEEEEEEEECCCCCCCHHCCCCCC TVLGWPTALIAQQNLGYVLTRSGQINVFDWSTRQAPTRISATETPGCKENVALQVVGDYA EEEECCCCEEECCCCCEEEEECCEEEEEECCCCCCCCEEECCCCCCCCCCEEEEEEECEE YVADWGRGLCIVDVRNPQQPSVIGRFDLTTDRNAVTDIAVQGSLVYMVDWSHGIYVIDVS EEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCEEEEECC DPTEPTQVSFFATAGFPAAIAVNGPMVYVGESINDQGVGGSVRIFDLSDLANPVEHSQFY CCCCCCEEEEEEECCCCEEEEECCCEEEEECCCCCCCCCCEEEEEEHHHHCCHHHHHHHH TSKVAQLAVIDQTVYVADNEGGLRILDVSNPDNIQMIGQYAENWFAMDLAIQDEYVYLAT HHHHEEEEEEEEEEEEEECCCCEEEEECCCCCCEEEHHHHCCCEEEEEEEEECCEEEEEE TSGLEIVDISNPSQPIPAGRLGDRLIDGIVVAGDNAYIGENGSIRQIDISQPSNPQVVAE CCCEEEEECCCCCCCCCCCHHHHHHHCCEEEECCCEEECCCCCEEEEECCCCCCCHHHHH TLLARDSWILPALHGGEIVGLSYHGGGMFVLEPEYQLFLPVISKN HHHHCCCEEEEEECCCEEEEEEECCCEEEEECCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA