Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
---|---|
Accession | NC_009972 |
Length | 6,346,587 |
Click here to switch to the map view.
The map label for this gene is 159897162
Identifier: 159897162
GI number: 159897162
Start: 730954
End: 732378
Strand: Direct
Name: 159897162
Synonym: Haur_0633
Alternate gene names: NA
Gene position: 730954-732378 (Clockwise)
Preceding gene: 159897161
Following gene: 159897166
Centisome position: 11.52
GC content: 50.67
Gene sequence:
>1425_bases ATGAGCGGCGTGACCGTTCGTTCAACCGAAGAATATACCCGCATCGCTTGGCGCTTGATCATTTTGAGCTTTCTGGCGTT TTGTTTTGTGATCGCAAGTAGTTGCTATTTGGCCTGGCGGGTCAAGGCGTTTGCCCGTACTCAGCCAGCTGAGCCAGGTA TCCTCGACACCTATGTCAGTGGGATTGAAATTATTCGGGCTGGCTTAGTCCAGCCTGAGCTACCCACGCCACCCAAAACA ATTATTTATGAAGGCGATCGCATTAATGTCAGCAGCAAAGCGCCAGCTGGTATCGCCGCCACGATCACCTTATTCGATGG CAGCAAACTCGATTTGTGGGCTGGTACAAGCGTGGTTTTTGAAAAAGTCCAGACGACGCGGTTTAGCTCGCGCAACCAAG AAGTAGCCTTGCGCTTGGACTCGGGCTTGGTGCGCTTGCGCTTGGCCTCGGTCGCCTCGCAACAATATCAAGATGTGCAT TTTAGTGTGTTCGTGCAGCAGGCTGGTTATAGTGTGGAACAGGCGTTGCTCAAACCAGGTGGCACCTATCGCGTGCGGTT GCTTGATGCCAAGGCACCAACCACCAGCGCTAGCGAACGTGAACGGCTTAAACAAACCACGATCAGCGAATATGTGGTTG AACAAGGTGGCATCACGCTGGCCTATAGCAGCCAAAACCGTAGCATCGACAACCAACAAAAGCTCGAAATTGCCCAAGGC CGCTTATCGCAACCACAGCCTGCCGAATGGCAATTGGCCCGTGATAGCAACTTTACCGAGTTTACCGCCCAAGAATATAA CAATAATGCGACTGTGCCAGTTTCGGTCACCGATATTGTGCGGGCTGACACTTGGCGCGTGTTTGGCTCGTTGTATTCGC CTGAAGCCGAGGAAGATGGCTATTTTTATGTGGTGGGCGGCTGTGCCCAACGTAGCACTGAGCAGCCGAATAATTGCTTG CGCCCGTTGATCAATGTGGCTCAATTTCATCGTGACATTAGCGAAGGCATTGATCATACCAAGAGCTTTCGCACTGGCAT CACCCAAACAATTGACCTTGATACAACCTCGTATAGCAAGCTTGAATTGAGCTTTACTGGGCGAATTTATGAGCAATCGC TCAATCGGGCGGGCGATATTGGCGAAGAATGTGCTTTGGCGATTGCAGTTTTCTACTACAACCCTGCCAACCAACTTGGC TCAACCACCTATTGCTTTTACGCCCGCGACGATGCTGGCCCAGGCAGCATCTCGAACAAAGAATATATTCGTTCGATCAA GTTGCCCTATCGCCAATGGACTGATCAAACCCTCGAACTCAAAGACGATCTTGGCAATATGCGGCGCATCTCGCACCTTG AAATTTACGCCAACGGCCACGATTATATCTCCGAAATTACCAACATTCGGCTGATTGCTAAATAA
Upstream 100 bases:
>100_bases TGGACGATTGGCTCAGCCGCTTTCAAACCATCCCGCATGCTGTGCGCGAAGCCAGCCGTGCAGCCCGATTAAACTCATTA CGCACCCAAGGGGACAAGGC
Downstream 100 bases:
>100_bases GTATTCCCTCACCCCCAACCCCTCTCCCACGGCGGCGGGCGAGGGGCGTTCCCATGGTTATGATGGCAAAAGCGGGTAAG AGACCGCAGCCCCTAATCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MSGVTVRSTEEYTRIAWRLIILSFLAFCFVIASSCYLAWRVKAFARTQPAEPGILDTYVSGIEIIRAGLVQPELPTPPKT IIYEGDRINVSSKAPAGIAATITLFDGSKLDLWAGTSVVFEKVQTTRFSSRNQEVALRLDSGLVRLRLASVASQQYQDVH FSVFVQQAGYSVEQALLKPGGTYRVRLLDAKAPTTSASERERLKQTTISEYVVEQGGITLAYSSQNRSIDNQQKLEIAQG RLSQPQPAEWQLARDSNFTEFTAQEYNNNATVPVSVTDIVRADTWRVFGSLYSPEAEEDGYFYVVGGCAQRSTEQPNNCL RPLINVAQFHRDISEGIDHTKSFRTGITQTIDLDTTSYSKLELSFTGRIYEQSLNRAGDIGEECALAIAVFYYNPANQLG STTYCFYARDDAGPGSISNKEYIRSIKLPYRQWTDQTLELKDDLGNMRRISHLEIYANGHDYISEITNIRLIAK
Sequences:
>Translated_474_residues MSGVTVRSTEEYTRIAWRLIILSFLAFCFVIASSCYLAWRVKAFARTQPAEPGILDTYVSGIEIIRAGLVQPELPTPPKT IIYEGDRINVSSKAPAGIAATITLFDGSKLDLWAGTSVVFEKVQTTRFSSRNQEVALRLDSGLVRLRLASVASQQYQDVH FSVFVQQAGYSVEQALLKPGGTYRVRLLDAKAPTTSASERERLKQTTISEYVVEQGGITLAYSSQNRSIDNQQKLEIAQG RLSQPQPAEWQLARDSNFTEFTAQEYNNNATVPVSVTDIVRADTWRVFGSLYSPEAEEDGYFYVVGGCAQRSTEQPNNCL RPLINVAQFHRDISEGIDHTKSFRTGITQTIDLDTTSYSKLELSFTGRIYEQSLNRAGDIGEECALAIAVFYYNPANQLG STTYCFYARDDAGPGSISNKEYIRSIKLPYRQWTDQTLELKDDLGNMRRISHLEIYANGHDYISEITNIRLIAK >Mature_473_residues SGVTVRSTEEYTRIAWRLIILSFLAFCFVIASSCYLAWRVKAFARTQPAEPGILDTYVSGIEIIRAGLVQPELPTPPKTI IYEGDRINVSSKAPAGIAATITLFDGSKLDLWAGTSVVFEKVQTTRFSSRNQEVALRLDSGLVRLRLASVASQQYQDVHF SVFVQQAGYSVEQALLKPGGTYRVRLLDAKAPTTSASERERLKQTTISEYVVEQGGITLAYSSQNRSIDNQQKLEIAQGR LSQPQPAEWQLARDSNFTEFTAQEYNNNATVPVSVTDIVRADTWRVFGSLYSPEAEEDGYFYVVGGCAQRSTEQPNNCLR PLINVAQFHRDISEGIDHTKSFRTGITQTIDLDTTSYSKLELSFTGRIYEQSLNRAGDIGEECALAIAVFYYNPANQLGS TTYCFYARDDAGPGSISNKEYIRSIKLPYRQWTDQTLELKDDLGNMRRISHLEIYANGHDYISEITNIRLIAK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53048; Mature: 52917
Theoretical pI: Translated: 5.81; Mature: 5.81
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGVTVRSTEEYTRIAWRLIILSFLAFCFVIASSCYLAWRVKAFARTQPAEPGILDTYVS CCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHCCCCCCCCHHHHHHH GIEIIRAGLVQPELPTPPKTIIYEGDRINVSSKAPAGIAATITLFDGSKLDLWAGTSVVF HHHHHHHCCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEEEEEECCCEEEEECCHHHHH EKVQTTRFSSRNQEVALRLDSGLVRLRLASVASQQYQDVHFSVFVQQAGYSVEQALLKPG HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHCCC GTYRVRLLDAKAPTTSASERERLKQTTISEYVVEQGGITLAYSSQNRSIDNQQKLEIAQG CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHC RLSQPQPAEWQLARDSNFTEFTAQEYNNNATVPVSVTDIVRADTWRVFGSLYSPEAEEDG CCCCCCCCCEEEECCCCCCEEEHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCC YFYVVGGCAQRSTEQPNNCLRPLINVAQFHRDISEGIDHTKSFRTGITQTIDLDTTSYSK EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCE LELSFTGRIYEQSLNRAGDIGEECALAIAVFYYNPANQLGSTTYCFYARDDAGPGSISNK EEEEECCHHHHHHHHHCCCCCHHHEEEEEEEEECCHHHCCCCEEEEEEECCCCCCCCCCH EYIRSIKLPYRQWTDQTLELKDDLGNMRRISHLEIYANGHDYISEITNIRLIAK HHHHHHCCCHHHCCCCCEEEHHHHCCHHEEEEEEEEECCHHHHHHHCCEEEEEC >Mature Secondary Structure SGVTVRSTEEYTRIAWRLIILSFLAFCFVIASSCYLAWRVKAFARTQPAEPGILDTYVS CCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHCCCCCCCCHHHHHHH GIEIIRAGLVQPELPTPPKTIIYEGDRINVSSKAPAGIAATITLFDGSKLDLWAGTSVVF HHHHHHHCCCCCCCCCCCCEEEEECCEEEECCCCCCCEEEEEEEECCCEEEEECCHHHHH EKVQTTRFSSRNQEVALRLDSGLVRLRLASVASQQYQDVHFSVFVQQAGYSVEQALLKPG HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHCCC GTYRVRLLDAKAPTTSASERERLKQTTISEYVVEQGGITLAYSSQNRSIDNQQKLEIAQG CCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHC RLSQPQPAEWQLARDSNFTEFTAQEYNNNATVPVSVTDIVRADTWRVFGSLYSPEAEEDG CCCCCCCCCEEEECCCCCCEEEHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCC YFYVVGGCAQRSTEQPNNCLRPLINVAQFHRDISEGIDHTKSFRTGITQTIDLDTTSYSK EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCE LELSFTGRIYEQSLNRAGDIGEECALAIAVFYYNPANQLGSTTYCFYARDDAGPGSISNK EEEEECCHHHHHHHHHCCCCCHHHEEEEEEEEECCHHHCCCCEEEEEEECCCCCCCCCCH EYIRSIKLPYRQWTDQTLELKDDLGNMRRISHLEIYANGHDYISEITNIRLIAK HHHHHHCCCHHHCCCCCEEEHHHHCCHHEEEEEEEEECCHHHHHHHCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA