Definition | Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genome. |
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Accession | NC_009972 |
Length | 6,346,587 |
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The map label for this gene is 159897071
Identifier: 159897071
GI number: 159897071
Start: 626851
End: 628089
Strand: Direct
Name: 159897071
Synonym: Haur_0542
Alternate gene names: NA
Gene position: 626851-628089 (Clockwise)
Preceding gene: 159897070
Following gene: 159897072
Centisome position: 9.88
GC content: 24.37
Gene sequence:
>1239_bases TTGACATTTGTGCTAGGATTTAAAAGATTTACATATTTGGGTATTTCTATGATGCAACCACTTACAAATATCAGTAAAGC TGTAGATAGGATTATTGAATCACTTCCACAATTACAGCCTGTTTTGGAATCAACGACTTATAGACTTGGTGATGACTCTA TTATCATTCGAAATAAGTATCCAGAATATCGAAACCAATTAAAATTACATAAAGATTTACTATCTAATATAATATTGGAA GAGTTAGATAATAAGGAATTTAATTTTATTATAGATGAATCTGATATTAATTTTATTGAATTCGATAGAATTTCTTCAAA AAGATCAGTATCTAAAAATATAAATCATAATTTTAATATAGAAAATAATATAAATTTAAATTTCTATACTTCTCAATCAA TAGATGTAATAGATTCTGGTATATCACAATATTTAGATGATTTTAAAAAAAGAATGGTGTGGCCTCACTACAAAATAATA AGAAAAAAAGAAAATTCATCAAAAATAGTTTACGAAATATCATTCATTTCGATTGGTGAATTGGGGTTTATCACAGATAT GACGGGAAAGATCTATTTAAGGAAAATAGGCGGAGGTGGATTTAACATCAAATATATAAATCCATTCCATATAAAAGATA ATATAGATAAGTTAGTTGAATTTCACCTCGAGGAATTTGATAAAATAAAGAAATGGCATAACTTTGAAATAGATATTCTT GAATCATCTATAGATTCTTCAAGAAATATTATAGTTATTTCTAGAGAGATATTTGAATATATTGAATATAGCTTAAAAGA AGATGAAATAATTGAAGATAATGATTTATATAGAATTAATAGAAATAATGAATATTACGTAAACCTTGATAGAATAAAAG AACTATCAAAAATTCAATCAAAAGATTTTGATATTACTAAACTAGTGAAATTATGTTTAGAATTAAATATATCATTTTCA AATGAGTGTTATTTTGCAGCTATATTTATTCTTAGGGCTATTATAGATCATATACCACCAATATTTGGACATATTAATTT TGATAATGTAGTAAGTAACTATAAAGGTAATTCTGGCAAAAAAATATTAAATCATCTTTTGGTTACGTTAAAAAATACTG CTCATATAAATATCCATAAACCTATTTCTAGGAAAGAAATTATTCCAAATCGACAACAAGTTGATTTTAAAAGTGAGATA GACTTTCTATTATCAGAGATAATACAAGAACTGTCATAG
Upstream 100 bases:
>100_bases CTGCATTCAAGTCACAAGCTGGCTTGTTGGCCTTTGGGGTGAAGGTTAACCTTCGGGATTTCTAAACAAGCCTGCCTGCT GTCTGAAACAGCAGGCAGGC
Downstream 100 bases:
>100_bases TGAGAAGGCAGTCATACATCAAGTATGACCGCCTTCTCATATTTAAACCGCTAGTTGAGCCGGCAATACATCCAACTAGG GCAAGGGCAATTCCACCACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 412; Mature: 411
Protein sequence:
>412_residues MTFVLGFKRFTYLGISMMQPLTNISKAVDRIIESLPQLQPVLESTTYRLGDDSIIIRNKYPEYRNQLKLHKDLLSNIILE ELDNKEFNFIIDESDINFIEFDRISSKRSVSKNINHNFNIENNINLNFYTSQSIDVIDSGISQYLDDFKKRMVWPHYKII RKKENSSKIVYEISFISIGELGFITDMTGKIYLRKIGGGGFNIKYINPFHIKDNIDKLVEFHLEEFDKIKKWHNFEIDIL ESSIDSSRNIIVISREIFEYIEYSLKEDEIIEDNDLYRINRNNEYYVNLDRIKELSKIQSKDFDITKLVKLCLELNISFS NECYFAAIFILRAIIDHIPPIFGHINFDNVVSNYKGNSGKKILNHLLVTLKNTAHINIHKPISRKEIIPNRQQVDFKSEI DFLLSEIIQELS
Sequences:
>Translated_412_residues MTFVLGFKRFTYLGISMMQPLTNISKAVDRIIESLPQLQPVLESTTYRLGDDSIIIRNKYPEYRNQLKLHKDLLSNIILE ELDNKEFNFIIDESDINFIEFDRISSKRSVSKNINHNFNIENNINLNFYTSQSIDVIDSGISQYLDDFKKRMVWPHYKII RKKENSSKIVYEISFISIGELGFITDMTGKIYLRKIGGGGFNIKYINPFHIKDNIDKLVEFHLEEFDKIKKWHNFEIDIL ESSIDSSRNIIVISREIFEYIEYSLKEDEIIEDNDLYRINRNNEYYVNLDRIKELSKIQSKDFDITKLVKLCLELNISFS NECYFAAIFILRAIIDHIPPIFGHINFDNVVSNYKGNSGKKILNHLLVTLKNTAHINIHKPISRKEIIPNRQQVDFKSEI DFLLSEIIQELS >Mature_411_residues TFVLGFKRFTYLGISMMQPLTNISKAVDRIIESLPQLQPVLESTTYRLGDDSIIIRNKYPEYRNQLKLHKDLLSNIILEE LDNKEFNFIIDESDINFIEFDRISSKRSVSKNINHNFNIENNINLNFYTSQSIDVIDSGISQYLDDFKKRMVWPHYKIIR KKENSSKIVYEISFISIGELGFITDMTGKIYLRKIGGGGFNIKYINPFHIKDNIDKLVEFHLEEFDKIKKWHNFEIDILE SSIDSSRNIIVISREIFEYIEYSLKEDEIIEDNDLYRINRNNEYYVNLDRIKELSKIQSKDFDITKLVKLCLELNISFSN ECYFAAIFILRAIIDHIPPIFGHINFDNVVSNYKGNSGKKILNHLLVTLKNTAHINIHKPISRKEIIPNRQQVDFKSEID FLLSEIIQELS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48475; Mature: 48344
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFVLGFKRFTYLGISMMQPLTNISKAVDRIIESLPQLQPVLESTTYRLGDDSIIIRNKY CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEECCC PEYRNQLKLHKDLLSNIILEELDNKEFNFIIDESDINFIEFDRISSKRSVSKNINHNFNI HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCHHHHHHCCCCCCCC ENNINLNFYTSQSIDVIDSGISQYLDDFKKRMVWPHYKIIRKKENSSKIVYEISFISIGE CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCEEEEEEEEEEECC LGFITDMTGKIYLRKIGGGGFNIKYINPFHIKDNIDKLVEFHLEEFDKIKKWHNFEIDIL CCEEECCCCEEEEEEECCCCEEEEEECCEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEE ESSIDSSRNIIVISREIFEYIEYSLKEDEIIEDNDLYRINRNNEYYVNLDRIKELSKIQS HHCCCCCCCEEEEEHHHHHHHHHCCCCCCEECCCCEEEEECCCEEEEEHHHHHHHHHHHC KDFDITKLVKLCLELNISFSNECYFAAIFILRAIIDHIPPIFGHINFDNVVSNYKGNSGK CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHCCCCCCHH KILNHLLVTLKNTAHINIHKPISRKEIIPNRQQVDFKSEIDFLLSEIIQELS HHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure TFVLGFKRFTYLGISMMQPLTNISKAVDRIIESLPQLQPVLESTTYRLGDDSIIIRNKY EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCEEEEECCC PEYRNQLKLHKDLLSNIILEELDNKEFNFIIDESDINFIEFDRISSKRSVSKNINHNFNI HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCCCCHHHHHHCCCCCCCC ENNINLNFYTSQSIDVIDSGISQYLDDFKKRMVWPHYKIIRKKENSSKIVYEISFISIGE CCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCHHHHEECCCCCEEEEEEEEEEECC LGFITDMTGKIYLRKIGGGGFNIKYINPFHIKDNIDKLVEFHLEEFDKIKKWHNFEIDIL CCEEECCCCEEEEEEECCCCEEEEEECCEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEE ESSIDSSRNIIVISREIFEYIEYSLKEDEIIEDNDLYRINRNNEYYVNLDRIKELSKIQS HHCCCCCCCEEEEEHHHHHHHHHCCCCCCEECCCCEEEEECCCEEEEEHHHHHHHHHHHC KDFDITKLVKLCLELNISFSNECYFAAIFILRAIIDHIPPIFGHINFDNVVSNYKGNSGK CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHCCCCCCHH KILNHLLVTLKNTAHINIHKPISRKEIIPNRQQVDFKSEIDFLLSEIIQELS HHHHHHHHHHCCCEEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA