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The map label for this gene is pdxS

Identifier: 15926196

GI number: 15926196

Start: 557598

End: 558485

Strand: Direct

Name: pdxS

Synonym: SA0477

Alternate gene names: 15926196

Gene position: 557598-558485 (Clockwise)

Preceding gene: 15926194

Following gene: 15926197

Centisome position: 19.81

GC content: 38.85

Gene sequence:

>888_bases
ATGAGTAAAATTATTGGATCAGACAGAGTCAAAAGAGGTATGGCTGAAATGCAAAAAGGCGGCGTTATTATGGATGTCGT
TAATGCTGAGCAAGCAAGAATTGCAGAAGAAGCAGGCGCGGTAGCAGTTATGGCATTAGAACGAGTACCTTCTGATATTA
GAGCTGCTGGTGGCGTTGCACGTATGGCAAACCCTAAAATTGTAGAAGAAGTAATGAATGCTGTTTCTATTCCAGTCATG
GCTAAAGCACGTATTGGTCATATCACTGAAGCAAGAGTATTAGAGGCGATGGGTGTTGACTATATTGATGAATCAGAAGT
GTTAACACCAGCAGATGAGGAATATCACTTAAGAAAAGATCAATTTACAGTACCATTTGTATGTGGATGTCGTAATTTAG
GTGAAGCTGCGCGTAGAATTGGTGAAGGTGCTGCTATGTTACGTACTAAAGGTGAACCAGGTACAGGTAATATTGTTGAA
GCTGTAAGACATATGAGACAAGTTAATTCAGAAGTTAGTCGATTGACTGTAATGAATGATGATGAGATTATGACTTTTGC
GAAAGATATCGGTGCGCCTTATGAAATTTTAAAACAAATTAAAGACAATGGTCGTTTACCGGTAGTTAACTTTGCAGCTG
GTGGCGTTGCGACTCCTCAAGATGCTGCTTTAATGATGGAATTAGGTGCTGACGGTGTATTCGTTGGATCAGGTATTTTT
AAATCAGAAGATCCAGAAAAATTTGCTAAAGCAATTGTTCAAGCAACAACACATTACCAAGACTATGAACTAATTGGAAG
ATTAGCAAGTGAACTTGGCACTGCTATGAAAGGTTTAGATATCAATCAATTATCATTAGAAGAACGTATGCAAGAGCGTG
GTTGGTAA

Upstream 100 bases:

>100_bases
TATAACTGACCTCCTAAATTTATCTTATTTTGTACCTTTTTAAATATCAGTTTATACATTACAATGTATTTAATCAACTT
GAAAAGGGGTTTTATGTATA

Downstream 100 bases:

>100_bases
GATATGAAAATAGGTGTATTAGCATTACAAGGTGCAGTACGTGAACATATTAGACATATTGAATTAAGTGGTCATGAAGG
TATTGCAGTTAAAAAAGTTG

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVM
AKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVE
AVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIF
KSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW

Sequences:

>Translated_295_residues
MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVM
AKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVE
AVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIF
KSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
>Mature_294_residues
SKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMA
KARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEA
VRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFK
SEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=291, Percent_Identity=56.0137457044674, Blast_Score=347, Evalue=2e-96,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=56.1224489795918, Blast_Score=337, Evalue=1e-93,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=56.1224489795918, Blast_Score=337, Evalue=1e-93,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDXS_STAA1 (A7WYT1)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001441106.1
- ProteinModelPortal:   A7WYT1
- SMR:   A7WYT1
- STRING:   A7WYT1
- EnsemblBacteria:   EBSTAT00000004238
- GeneID:   5559199
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_0516
- eggNOG:   COG0214
- GeneTree:   EBGT00050000024936
- HOGENOM:   HBG292342
- OMA:   ARMSDPD
- ProtClustDB:   PRK04180
- BioCyc:   SAUR418127:SAHV_0516-MONOMER
- HAMAP:   MF_01824
- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852
- Gene3D:   G3DSA:3.20.20.70
- PIRSF:   PIRSF029271
- TIGRFAMs:   TIGR00343

Pfam domain/function: PF01680 SOR_SNZ; SSF51366 RibP_bind_barrel

EC number: NA

Molecular weight: Translated: 31993; Mature: 31862

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS01235 PDXS_SNZ_1; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVA
CCCCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCHHHHHHHHHCCHHHHHHCCHH
RMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKD
HCCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCC
QFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMND
CCCCCHHHCCHHHHHHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCC
DEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIF
CHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEECCCCC
KSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVA
CCCCCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHCHHHHHHHHHCCHHHHHHCCHH
RMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKD
HCCCHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCC
QFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMND
CCCCCHHHCCHHHHHHHHHHCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHHHEEECCC
DEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIF
CHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHCCCCEEECCCCC
KSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
CCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA