Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159185110
Identifier: 159185110
GI number: 159185110
Start: 2202048
End: 2202761
Strand: Direct
Name: 159185110
Synonym: Atu2229
Alternate gene names: NA
Gene position: 2202048-2202761 (Clockwise)
Preceding gene: 15889504
Following gene: 159185111
Centisome position: 77.49
GC content: 58.68
Gene sequence:
>714_bases ATGGGATTGATCCGCTTTTGTCTGCTCTTTCTTGCTCTCGCCACACCAGTCAACGCGGCGAAGCTCTTCCTGACGACCGA GGTCTATCCGCCTTATAATCTGCAGGCCAGTGACGGCAGCGTGCACGGCGTCTATTTCGACCAGCTCAAGATCGTGCTCC AGGACACCGATACGGATTACGAAGTCGCCGTCATGCCCTGGGCGCGGGCCATTGCACTGGCCACAACACAGGCCATGCAC TGCGTCTTCGCCACGGCACGAACGCCCGAGCGGGAAAAGCTCTTCAAATGGGTTGCGCCAATCCATACCGACCGCAACAT TCTCGTGGCCCGCCGCGAGGCGAATATCGAGGCTTCCAGCCTCGAGGACGCCAGAAGATACCGGGTGGGAACCCAGCGGG GCGACTATACCGAAGCACTGTTGGAAAAACTCGGTTTCCCGCAGGTGGATGTCGGCGCGGATTTCGAGATCACGCTCAAC AAGCTGAAACTCGGGCGCATCGACCTCATGCCCATGTCGGAAAGCACCCTCAAGAGCCTGCCTGCGAACAGTTTCAAGGA GGTGATAACGCTGAGCCGGCAACAGCTCGGCCTCGCCTGCAACAAAACCGTTCCTGACCAGATCATCGCGAAATTGCAGG CCCGGCTGGACAAGCTGATCGCCGATGGAACGCAGCAGCAGATATTCGATCGTTACAGTCTGGTCAGCCCCTGA
Upstream 100 bases:
>100_bases CGCGCCCGCAGCCGGTCCAAAGGCTGATCGCCGCGTTCGATGCGACGTCCGGACAAAGCCGCTTTGCGGCGCGACAAGCG TGAAGCCGATGGAGGCAGCG
Downstream 100 bases:
>100_bases GCAATCGGCCGATCCGCCCGCGAACCCATAAAAAGATTGACATCAGGCACTTTTCGGGGTGGTGACAACAGCATCATCAG GCAAAACGCGGACATGCCCC
Product: ABC transporter, substrate binding protein (amino acid)
Products: NA
Alternate protein names: ABC-Type Amino Acid Transport/Signal Transduction Systems; ABC-Type Amino Acid Transporter; Periplasmic Protein; Amino Acid ABC Transporter; ABC Amino Acid Transporter Periplasmic Protein; Cache Sensor Protein
Number of amino acids: Translated: 237; Mature: 236
Protein sequence:
>237_residues MGLIRFCLLFLALATPVNAAKLFLTTEVYPPYNLQASDGSVHGVYFDQLKIVLQDTDTDYEVAVMPWARAIALATTQAMH CVFATARTPEREKLFKWVAPIHTDRNILVARREANIEASSLEDARRYRVGTQRGDYTEALLEKLGFPQVDVGADFEITLN KLKLGRIDLMPMSESTLKSLPANSFKEVITLSRQQLGLACNKTVPDQIIAKLQARLDKLIADGTQQQIFDRYSLVSP
Sequences:
>Translated_237_residues MGLIRFCLLFLALATPVNAAKLFLTTEVYPPYNLQASDGSVHGVYFDQLKIVLQDTDTDYEVAVMPWARAIALATTQAMH CVFATARTPEREKLFKWVAPIHTDRNILVARREANIEASSLEDARRYRVGTQRGDYTEALLEKLGFPQVDVGADFEITLN KLKLGRIDLMPMSESTLKSLPANSFKEVITLSRQQLGLACNKTVPDQIIAKLQARLDKLIADGTQQQIFDRYSLVSP >Mature_236_residues GLIRFCLLFLALATPVNAAKLFLTTEVYPPYNLQASDGSVHGVYFDQLKIVLQDTDTDYEVAVMPWARAIALATTQAMHC VFATARTPEREKLFKWVAPIHTDRNILVARREANIEASSLEDARRYRVGTQRGDYTEALLEKLGFPQVDVGADFEITLNK LKLGRIDLMPMSESTLKSLPANSFKEVITLSRQQLGLACNKTVPDQIIAKLQARLDKLIADGTQQQIFDRYSLVSP
Specific function: Unknown
COG id: COG0834
COG function: function code ET; ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26547; Mature: 26416
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLIRFCLLFLALATPVNAAKLFLTTEVYPPYNLQASDGSVHGVYFDQLKIVLQDTDTDY CCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEECCCCCEEEEEHHHEEEEEECCCCCE EVAVMPWARAIALATTQAMHCVFATARTPEREKLFKWVAPIHTDRNILVARREANIEASS EEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHH LEDARRYRVGTQRGDYTEALLEKLGFPQVDVGADFEITLNKLKLGRIDLMPMSESTLKSL HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEECEEEEEECCHHHHHHC PANSFKEVITLSRQQLGLACNKTVPDQIIAKLQARLDKLIADGTQQQIFDRYSLVSP CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC >Mature Secondary Structure GLIRFCLLFLALATPVNAAKLFLTTEVYPPYNLQASDGSVHGVYFDQLKIVLQDTDTDY CHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCEECCCCCEEEEEHHHEEEEEECCCCCE EVAVMPWARAIALATTQAMHCVFATARTPEREKLFKWVAPIHTDRNILVARREANIEASS EEEECCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEECCCCCHHH LEDARRYRVGTQRGDYTEALLEKLGFPQVDVGADFEITLNKLKLGRIDLMPMSESTLKSL HHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEEEEEECEEEEEECCHHHHHHC PANSFKEVITLSRQQLGLACNKTVPDQIIAKLQARLDKLIADGTQQQIFDRYSLVSP CCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA