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The map label for this gene is yciR [C]

Identifier: 15889504

GI number: 15889504

Start: 2199643

End: 2202030

Strand: Direct

Name: yciR [C]

Synonym: Atu2228

Alternate gene names: 15889504

Gene position: 2199643-2202030 (Clockwise)

Preceding gene: 15889503

Following gene: 159185110

Centisome position: 77.41

GC content: 59.42

Gene sequence:

>2388_bases
ATGGCTCATTCCGTCGAAAGCCGCTTTATCGCGATTGTTTCCGGCGCACTTCTTACAGTGGTCGCACCGCTTTTCACGCT
TTTGCTGACGCTTTCCTATAACGAGGCAATCCGCAGCCAGCGCAACCATATCGAAATTCTGCTGTCGACGAATACGCAGG
CGCTGGCCCGCCCCCTGTGGGACCTTGATGACGACACCATAAATCAGATTACCGGAACCCTTGTTTCCGATCCCATGATC
CGCATGGTCGAGGTCAAGGATACATCCGGCCAGCTCGATGTCGTCCAGACTGCCGGCAGCGACATCATCCAGGACGCCGC
CTCGACGACACGCGAGGTGATCTACAAGACCACCAAGGGACCAGTCACCGTTGGGCAGCTGACGGTCTATTACGATGATG
TCGGCCTTCTGACCTCGCTCAGCCGGACCGAACTGGCCTTTATCACGATTTTCATCCTCGCCGTCCTCACCATCGTTCTT
GCCGCCATCGTCGGCAACCGCTTCATGGTCATCCGCCCGCTGATGCGACTGGCGGCGGCGATAGAGGCGACACGCCGCCT
CGGCTCACGCCACCATGTCGACTGGCGCTCGAAGGATGAAATCGGCCGGCTGGCAAAAAGCTTCAACGAAATGCAGACCC
AGCTCGAAAAGGAAGAGCTGGAGATCAAGAATGCCCACGAACGCAAGACGGAGATCTACAACCGTACACCCGCCATGCTG
TTCTCGCTCGACAGGCACGACCGGATTGCCGCCGTCAGCGACTATTGGGTGCAGGCGACCGGTTACGACCGCACCAGGAT
ACTCGGCCTGAACTTCGCCGATCTCATCCATCCCGACGACAGGTCCCTGTTTCAGCAGCGCAAGACGGCGCACCCCTCGC
CCGACGCTTCACACAACGGCATCACCGTGCGTTTCCATTGCATGGATGGCGGTGTCATGGACGCGCTCATCCTTGAAAAG
CCCCTTGATTCCGGCGATACCACGCAGCAAAGCACGTGTCTTTGCGTCATGACCGATGTGACCGAACTGAGCCAGTCGGA
AAAACGCAACCGGCAGCAGGCCATTTCCGACCATCTGACCGGCCTCTTCAACCGTCAGGGCTTCGAGGCGATCCTCGACC
TGCAGATCCGCGATGCGGACCGGAACGGCAGCGAACTGGCCTGCCTGTTCATCGACCTCGACCGTTTCAAGGCCATCAAC
GACAATCTCGGCCATGCGGCGGGTGACGCCGTTCTCAAGCAATTCACGCTGAAACTCGAACCCCTGCTCACGCCGCTCGA
CAGCGCTTCGCGGCTTGGCGGCGACGAATTCGCCATTCTGCTGGCCGGCGACAAAGTGGAAGAACGCGCCCTGGAATTTT
GCGAGCGGGTCTGCGCCATGCTGGACATGCCCTTCGAGATCGAGAACAACAGCATCCGCCTCAGCGCCAGCATCGGCATG
GCTGTCTATCCACTGCACGCCTCCAGCGCGTCGGAGCTTTTGCAGAATGCCGACATGGCGATGTATAGCCGCAAGAGAAC
CGGCAAAAACGGCTCGCAGGTCTTCGACAGCTCGATCATGGACCGCGCGCGCGAACATGCGGAGCTGGAGCGGGATATCG
CCCAAGCGCTCTCCGAGGACTGGTTCGAAGCTTATTTCCAACCCATTCAAGACCTCGCAACCGGCCAGACGGCGGGTTTC
GAAGCACTGCTGCGTCTCAACCATCCCGACAAGGGATTGCTTTCCCCCGCCGCGATCGTCAGCCTTGCCGAAGAAAACGG
CACCATTCAACGCATCGGCAATCTCATTCTCGATCAGTCGATCGCCAATCTCGCCAGGCTGTCGCGCCTGCCCGGGATGG
ATCAGACCTATGTGGCAGTCAATTTTTCGCCGCTGCAATTCGAACCGGGATTGCCGACTCGCATCGCCGGCGTGCTGCAC
CGGCACGGTATTCTCCCCGCACGTCTGGTCATTGAGATCACCGAAGCCGTCATCATGAAGGACGATCCGCAAATCCGGGC
GATCCTCAATGCCATTCACCAGCTCGGCTGCCGCATCGCGCTGGATGATTTCGGCACGGGTTATTCCTCGCTCAGCTATC
TCAGCCGTTTTCCGGTCGATATCGTCAAGATCGACCAGTCCTTCACCCGCTCGATCTGCGACGACACCGTGGACATCAGG
CAGCGGAGCCGTATGCTTGTCGAAGGCATCGCCGCCATCTCGCACAAGATGAACTGCACCGTTATTGCCGAGGGCGTGGA
GACGGAAGAGCAGAAGGACCTTCTGACCGATATGGGCGCGGATTTCGGACAGGGTTATTATTTTGCGCGCCCGCAGCCGG
TCCAAAGGCTGATCGCCGCGTTCGATGCGACGTCCGGACAAAGCCGCTTTGCGGCGCGACAAGCGTGA

Upstream 100 bases:

>100_bases
GAGGGAACGCGGCCTTTGCCGAAAACCCCTCGCAAACCCCATCCGGATGGGCAAAAACGCAGCGCAGCAAGTCTGGGGCA
AAGGGTAGCTGCAATTCAAC

Downstream 100 bases:

>100_bases
AGCCGATGGAGGCAGCGATGGGATTGATCCGCTTTTGTCTGCTCTTTCTTGCTCTCGCCACACCAGTCAACGCGGCGAAG
CTCTTCCTGACGACCGAGGT

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 795; Mature: 794

Protein sequence:

>795_residues
MAHSVESRFIAIVSGALLTVVAPLFTLLLTLSYNEAIRSQRNHIEILLSTNTQALARPLWDLDDDTINQITGTLVSDPMI
RMVEVKDTSGQLDVVQTAGSDIIQDAASTTREVIYKTTKGPVTVGQLTVYYDDVGLLTSLSRTELAFITIFILAVLTIVL
AAIVGNRFMVIRPLMRLAAAIEATRRLGSRHHVDWRSKDEIGRLAKSFNEMQTQLEKEELEIKNAHERKTEIYNRTPAML
FSLDRHDRIAAVSDYWVQATGYDRTRILGLNFADLIHPDDRSLFQQRKTAHPSPDASHNGITVRFHCMDGGVMDALILEK
PLDSGDTTQQSTCLCVMTDVTELSQSEKRNRQQAISDHLTGLFNRQGFEAILDLQIRDADRNGSELACLFIDLDRFKAIN
DNLGHAAGDAVLKQFTLKLEPLLTPLDSASRLGGDEFAILLAGDKVEERALEFCERVCAMLDMPFEIENNSIRLSASIGM
AVYPLHASSASELLQNADMAMYSRKRTGKNGSQVFDSSIMDRAREHAELERDIAQALSEDWFEAYFQPIQDLATGQTAGF
EALLRLNHPDKGLLSPAAIVSLAEENGTIQRIGNLILDQSIANLARLSRLPGMDQTYVAVNFSPLQFEPGLPTRIAGVLH
RHGILPARLVIEITEAVIMKDDPQIRAILNAIHQLGCRIALDDFGTGYSSLSYLSRFPVDIVKIDQSFTRSICDDTVDIR
QRSRMLVEGIAAISHKMNCTVIAEGVETEEQKDLLTDMGADFGQGYYFARPQPVQRLIAAFDATSGQSRFAARQA

Sequences:

>Translated_795_residues
MAHSVESRFIAIVSGALLTVVAPLFTLLLTLSYNEAIRSQRNHIEILLSTNTQALARPLWDLDDDTINQITGTLVSDPMI
RMVEVKDTSGQLDVVQTAGSDIIQDAASTTREVIYKTTKGPVTVGQLTVYYDDVGLLTSLSRTELAFITIFILAVLTIVL
AAIVGNRFMVIRPLMRLAAAIEATRRLGSRHHVDWRSKDEIGRLAKSFNEMQTQLEKEELEIKNAHERKTEIYNRTPAML
FSLDRHDRIAAVSDYWVQATGYDRTRILGLNFADLIHPDDRSLFQQRKTAHPSPDASHNGITVRFHCMDGGVMDALILEK
PLDSGDTTQQSTCLCVMTDVTELSQSEKRNRQQAISDHLTGLFNRQGFEAILDLQIRDADRNGSELACLFIDLDRFKAIN
DNLGHAAGDAVLKQFTLKLEPLLTPLDSASRLGGDEFAILLAGDKVEERALEFCERVCAMLDMPFEIENNSIRLSASIGM
AVYPLHASSASELLQNADMAMYSRKRTGKNGSQVFDSSIMDRAREHAELERDIAQALSEDWFEAYFQPIQDLATGQTAGF
EALLRLNHPDKGLLSPAAIVSLAEENGTIQRIGNLILDQSIANLARLSRLPGMDQTYVAVNFSPLQFEPGLPTRIAGVLH
RHGILPARLVIEITEAVIMKDDPQIRAILNAIHQLGCRIALDDFGTGYSSLSYLSRFPVDIVKIDQSFTRSICDDTVDIR
QRSRMLVEGIAAISHKMNCTVIAEGVETEEQKDLLTDMGADFGQGYYFARPQPVQRLIAAFDATSGQSRFAARQA
>Mature_794_residues
AHSVESRFIAIVSGALLTVVAPLFTLLLTLSYNEAIRSQRNHIEILLSTNTQALARPLWDLDDDTINQITGTLVSDPMIR
MVEVKDTSGQLDVVQTAGSDIIQDAASTTREVIYKTTKGPVTVGQLTVYYDDVGLLTSLSRTELAFITIFILAVLTIVLA
AIVGNRFMVIRPLMRLAAAIEATRRLGSRHHVDWRSKDEIGRLAKSFNEMQTQLEKEELEIKNAHERKTEIYNRTPAMLF
SLDRHDRIAAVSDYWVQATGYDRTRILGLNFADLIHPDDRSLFQQRKTAHPSPDASHNGITVRFHCMDGGVMDALILEKP
LDSGDTTQQSTCLCVMTDVTELSQSEKRNRQQAISDHLTGLFNRQGFEAILDLQIRDADRNGSELACLFIDLDRFKAIND
NLGHAAGDAVLKQFTLKLEPLLTPLDSASRLGGDEFAILLAGDKVEERALEFCERVCAMLDMPFEIENNSIRLSASIGMA
VYPLHASSASELLQNADMAMYSRKRTGKNGSQVFDSSIMDRAREHAELERDIAQALSEDWFEAYFQPIQDLATGQTAGFE
ALLRLNHPDKGLLSPAAIVSLAEENGTIQRIGNLILDQSIANLARLSRLPGMDQTYVAVNFSPLQFEPGLPTRIAGVLHR
HGILPARLVIEITEAVIMKDDPQIRAILNAIHQLGCRIALDDFGTGYSSLSYLSRFPVDIVKIDQSFTRSICDDTVDIRQ
RSRMLVEGIAAISHKMNCTVIAEGVETEEQKDLLTDMGADFGQGYYFARPQPVQRLIAAFDATSGQSRFAARQA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=460, Percent_Identity=34.1304347826087, Blast_Score=254, Evalue=2e-68,
Organism=Escherichia coli, GI87081921, Length=422, Percent_Identity=31.042654028436, Blast_Score=191, Evalue=2e-49,
Organism=Escherichia coli, GI226510982, Length=397, Percent_Identity=29.4710327455919, Blast_Score=174, Evalue=3e-44,
Organism=Escherichia coli, GI1786507, Length=282, Percent_Identity=32.6241134751773, Blast_Score=148, Evalue=2e-36,
Organism=Escherichia coli, GI1790496, Length=247, Percent_Identity=34.0080971659919, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI87081845, Length=258, Percent_Identity=33.3333333333333, Blast_Score=127, Evalue=3e-30,
Organism=Escherichia coli, GI1788502, Length=252, Percent_Identity=30.1587301587302, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=31.5789473684211, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI1787055, Length=311, Percent_Identity=27.9742765273312, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI1788381, Length=289, Percent_Identity=31.8339100346021, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI87081743, Length=232, Percent_Identity=31.8965517241379, Blast_Score=119, Evalue=7e-28,
Organism=Escherichia coli, GI87082096, Length=450, Percent_Identity=25.3333333333333, Blast_Score=119, Evalue=8e-28,
Organism=Escherichia coli, GI1788849, Length=415, Percent_Identity=24.8192771084337, Blast_Score=119, Evalue=1e-27,
Organism=Escherichia coli, GI1786584, Length=217, Percent_Identity=30.4147465437788, Blast_Score=102, Evalue=7e-23,
Organism=Escherichia coli, GI145693134, Length=192, Percent_Identity=33.8541666666667, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=37.2549019607843, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081881, Length=183, Percent_Identity=32.2404371584699, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=32.3353293413174, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI87082007, Length=230, Percent_Identity=31.7391304347826, Blast_Score=77, Evalue=6e-15,
Organism=Escherichia coli, GI1787802, Length=160, Percent_Identity=28.75, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=30.8641975308642, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87081974, Length=106, Percent_Identity=35.8490566037736, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787056, Length=160, Percent_Identity=33.125, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87081977, Length=156, Percent_Identity=32.0512820512821, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787410, Length=229, Percent_Identity=23.1441048034935, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 88224; Mature: 88092

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAHSVESRFIAIVSGALLTVVAPLFTLLLTLSYNEAIRSQRNHIEILLSTNTQALARPLW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHC
DLDDDTINQITGTLVSDPMIRMVEVKDTSGQLDVVQTAGSDIIQDAASTTREVIYKTTKG
CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEHHCCHHHHHHHHHHHHHHHEECCCC
PVTVGQLTVYYDDVGLLTSLSRTELAFITIFILAVLTIVLAAIVGNRFMVIRPLMRLAAA
CEEEEEEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IEATRRLGSRHHVDWRSKDEIGRLAKSFNEMQTQLEKEELEIKNAHERKTEIYNRTPAML
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHE
FSLDRHDRIAAVSDYWVQATGYDRTRILGLNFADLIHPDDRSLFQQRKTAHPSPDASHNG
EECCCCCCEEEEHHHEEEECCCCCEEEEECCHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
ITVRFHCMDGGVMDALILEKPLDSGDTTQQSTCLCVMTDVTELSQSEKRNRQQAISDHLT
EEEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
GLFNRQGFEAILDLQIRDADRNGSELACLFIDLDRFKAINDNLGHAAGDAVLKQFTLKLE
HHHCCCCCHHEEEEEEECCCCCCCEEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHH
PLLTPLDSASRLGGDEFAILLAGDKVEERALEFCERVCAMLDMPFEIENNSIRLSASIGM
HHCCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCE
AVYPLHASSASELLQNADMAMYSRKRTGKNGSQVFDSSIMDRAREHAELERDIAQALSED
EEEEECCCHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFEAYFQPIQDLATGQTAGFEALLRLNHPDKGLLSPAAIVSLAEENGTIQRIGNLILDQS
HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
IANLARLSRLPGMDQTYVAVNFSPLQFEPGLPTRIAGVLHRHGILPARLVIEITEAVIMK
HHHHHHHHHCCCCCCEEEEEEECCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCC
DDPQIRAILNAIHQLGCRIALDDFGTGYSSLSYLSRFPVDIVKIDQSFTRSICDDTVDIR
CCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHH
QRSRMLVEGIAAISHKMNCTVIAEGVETEEQKDLLTDMGADFGQGYYFARPQPVQRLIAA
HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHH
FDATSGQSRFAARQA
HCCCCCCHHHHHCCC
>Mature Secondary Structure 
AHSVESRFIAIVSGALLTVVAPLFTLLLTLSYNEAIRSQRNHIEILLSTNTQALARPLW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHC
DLDDDTINQITGTLVSDPMIRMVEVKDTSGQLDVVQTAGSDIIQDAASTTREVIYKTTKG
CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCEEEEHHCCHHHHHHHHHHHHHHHEECCCC
PVTVGQLTVYYDDVGLLTSLSRTELAFITIFILAVLTIVLAAIVGNRFMVIRPLMRLAAA
CEEEEEEEEEEECHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
IEATRRLGSRHHVDWRSKDEIGRLAKSFNEMQTQLEKEELEIKNAHERKTEIYNRTPAML
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHE
FSLDRHDRIAAVSDYWVQATGYDRTRILGLNFADLIHPDDRSLFQQRKTAHPSPDASHNG
EECCCCCCEEEEHHHEEEECCCCCEEEEECCHHHHCCCCHHHHHHHHHCCCCCCCCCCCC
ITVRFHCMDGGVMDALILEKPLDSGDTTQQSTCLCVMTDVTELSQSEKRNRQQAISDHLT
EEEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHH
GLFNRQGFEAILDLQIRDADRNGSELACLFIDLDRFKAINDNLGHAAGDAVLKQFTLKLE
HHHCCCCCHHEEEEEEECCCCCCCEEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHHHH
PLLTPLDSASRLGGDEFAILLAGDKVEERALEFCERVCAMLDMPFEIENNSIRLSASIGM
HHCCCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCE
AVYPLHASSASELLQNADMAMYSRKRTGKNGSQVFDSSIMDRAREHAELERDIAQALSED
EEEEECCCHHHHHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WFEAYFQPIQDLATGQTAGFEALLRLNHPDKGLLSPAAIVSLAEENGTIQRIGNLILDQS
HHHHHHHHHHHHHCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
IANLARLSRLPGMDQTYVAVNFSPLQFEPGLPTRIAGVLHRHGILPARLVIEITEAVIMK
HHHHHHHHHCCCCCCEEEEEEECCEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCC
DDPQIRAILNAIHQLGCRIALDDFGTGYSSLSYLSRFPVDIVKIDQSFTRSICDDTVDIR
CCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEECCHHHHHHHHCCHHHHH
QRSRMLVEGIAAISHKMNCTVIAEGVETEEQKDLLTDMGADFGQGYYFARPQPVQRLIAA
HHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHHHHH
FDATSGQSRFAARQA
HCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]