Click here to switch to the map view.

The map label for this gene is ycfQ [H]

Identifier: 159185067

GI number: 159185067

Start: 2100863

End: 2101564

Strand: Reverse

Name: ycfQ [H]

Synonym: Atu2135

Alternate gene names: 159185067

Gene position: 2101564-2100863 (Counterclockwise)

Preceding gene: 15889417

Following gene: 159185066

Centisome position: 73.96

GC content: 59.97

Gene sequence:

>702_bases
ATGAGGCGCTTCCCATCGCTTCCTCATGGCACGCGTTTTTCGCTTGATTTGGAAATGATCGTTTCCTATATTGCGTTCAT
GACCAATACGACCCAAACTCATTCCCAGGAGCAACGCCATCGCGGCCGGCCACGCGAGTTCGATCTCGATCGTGCGCTTG
ACGGCGCGATCCGTGTCTTTTCCCGGCGCGGCTACCACGCCACTTCGGTCGGTGATCTCACCGATGCGATGGAGCTGGCG
CAGGGTAGTCTCTACAAGGCCTTCAAGGACAAGAAAGCCATCTTCATCGCTACGATGGAGCGCTACAGGATCGTGCAGAC
CGAGCGGTTCGAGGCGGCGGTGGCCGGCGGCGAGACTGGTTATGAACGTCTGAGAGCCGGACTGATGTTTTATGCCGAAC
GATCCCACGGCGGTGTGGGCTCGGACGGGTGTCTGGTGGTTGGCGCCGCTGCCGATCTGGCTGCCCTAGATGACGACATT
GCCGTCGTGGTTGAGCGGGCGGTGAAGGCGAGGGAGCGGATCGTCGCCCGTATCATCACCGAAGGGCAGAAGGATGGTTC
CGTGCATTCGACGGCCGACCCGGATGATCTCGCCCGGGCGATGCTGTGCATGATGTACGGCATGCGCGTAGTAGGGAAAA
CCGGGCGCACCCTGAAAGACATGGTGGCCGTGGTGGATATCGCCATGAAGCTTGCTGATTGA

Upstream 100 bases:

>100_bases
GCTGCCTGACCCCACCTTGCGATTTCCGGCTGGTTGCAGCGACGTTGCCGCGGTTGGATAAAATGGGCACCCCCCCAAAT
TGCTGAGGAGAGGCGTCGTT

Downstream 100 bases:

>100_bases
TTTTGTGACTATTTAGGAAACATTTGTTTCCATATTGGAGAAAATGATGACAACGCGTGTAATTGATGGGGATGATGTTG
AAGCGACATCCATTTCCCCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MRRFPSLPHGTRFSLDLEMIVSYIAFMTNTTQTHSQEQRHRGRPREFDLDRALDGAIRVFSRRGYHATSVGDLTDAMELA
QGSLYKAFKDKKAIFIATMERYRIVQTERFEAAVAGGETGYERLRAGLMFYAERSHGGVGSDGCLVVGAAADLAALDDDI
AVVVERAVKARERIVARIITEGQKDGSVHSTADPDDLARAMLCMMYGMRVVGKTGRTLKDMVAVVDIAMKLAD

Sequences:

>Translated_233_residues
MRRFPSLPHGTRFSLDLEMIVSYIAFMTNTTQTHSQEQRHRGRPREFDLDRALDGAIRVFSRRGYHATSVGDLTDAMELA
QGSLYKAFKDKKAIFIATMERYRIVQTERFEAAVAGGETGYERLRAGLMFYAERSHGGVGSDGCLVVGAAADLAALDDDI
AVVVERAVKARERIVARIITEGQKDGSVHSTADPDDLARAMLCMMYGMRVVGKTGRTLKDMVAVVDIAMKLAD
>Mature_233_residues
MRRFPSLPHGTRFSLDLEMIVSYIAFMTNTTQTHSQEQRHRGRPREFDLDRALDGAIRVFSRRGYHATSVGDLTDAMELA
QGSLYKAFKDKKAIFIATMERYRIVQTERFEAAVAGGETGYERLRAGLMFYAERSHGGVGSDGCLVVGAAADLAALDDDI
AVVVERAVKARERIVARIITEGQKDGSVHSTADPDDLARAMLCMMYGMRVVGKTGRTLKDMVAVVDIAMKLAD

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=207, Percent_Identity=27.536231884058, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 25755; Mature: 25755

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFPSLPHGTRFSLDLEMIVSYIAFMTNTTQTHSQEQRHRGRPREFDLDRALDGAIRVF
CCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
SRRGYHATSVGDLTDAMELAQGSLYKAFKDKKAIFIATMERYRIVQTERFEAAVAGGETG
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHH
YERLRAGLMFYAERSHGGVGSDGCLVVGAAADLAALDDDIAVVVERAVKARERIVARIIT
HHHHHHHHHHEEECCCCCCCCCCCEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
EGQKDGSVHSTADPDDLARAMLCMMYGMRVVGKTGRTLKDMVAVVDIAMKLAD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRRFPSLPHGTRFSLDLEMIVSYIAFMTNTTQTHSQEQRHRGRPREFDLDRALDGAIRVF
CCCCCCCCCCCEEEEEHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
SRRGYHATSVGDLTDAMELAQGSLYKAFKDKKAIFIATMERYRIVQTERFEAAVAGGETG
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHCCCCHH
YERLRAGLMFYAERSHGGVGSDGCLVVGAAADLAALDDDIAVVVERAVKARERIVARIIT
HHHHHHHHHHEEECCCCCCCCCCCEEEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
EGQKDGSVHSTADPDDLARAMLCMMYGMRVVGKTGRTLKDMVAVVDIAMKLAD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]