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The map label for this gene is sufD [H]

Identifier: 159184935

GI number: 159184935

Start: 1800987

End: 1802258

Strand: Reverse

Name: sufD [H]

Synonym: Atu1822

Alternate gene names: 159184935

Gene position: 1802258-1800987 (Counterclockwise)

Preceding gene: 15889126

Following gene: 159184934

Centisome position: 63.42

GC content: 60.22

Gene sequence:

>1272_bases
ATGAACATTCAAACGACCAACCGGCTGACGCCAGCGGAAACCGCGCTGATCGACGCCTATACCGCCAAGTTCAGTGAATT
GCCGGGCAATGGCGCGGTTGTCGCCGCCCGTGACGTGCTGTTCGACGATCTGAAGACCGGCGGTCTTCCGACCCGTCGCA
TCGAGGCTTGGCACTACACTGATCTGAAAACGCTGCTGCGCGCCATTCCGGATGACCAGCCTGCGCCCGTTATCGACAAG
CAGGCATCGCTTGTCGCCGGTTCGCCCGTCGCCTATGTGCTGCACGGCACGGCCAATATCGGCAAGATCGAAGACATCAG
TGTTTCCAGCTTTGCCGAGAGCCTGCTTGACGGCACGGCTGCCACAGGCCTTGCGGAAGCGAGCAAAGACGACGTGATCG
GCCGTATCAACGGCAGCTTCGTGCGCGACGGCCTGACGCTCGACATTCCTGCCGATGCCGAGATCGAAAAGCCGATCGAA
TTGCAGGCGATCCATGGTGCAGGTCAGGTTCACAGCCGCTTCCCGGTGCGCTTCGGCAAGGGTTCCAAAGCGACCGTTAT
CGAGCGTCACCTTTCGGTGACTTCGGATGCGGCCCTGGTTTCCTCCGTCAGCGACATCGTCGTTGAAGACGGCGCGGAAG
TGACCTGGATCATCCTGCAGCAACAGGGTGCCGCCGATATCCATCTTGGCCAGCTGCGCATGAAAATCGGCGCGGATGCC
AAGGTTCGCCTGTTCGTCATCAATGCCGGTGGCAAGCTGGTGCGCCAGGAGTTGCGCATCGATGTGGATGGCGAGGGCAC
TGACCTCATCGTTCGCGGCGTCAACCTGCTGGGCGGTGAAACCCATACCGACGTGACGATGGTTCTCGGTCATAACGTGC
CGAACACGACCTCGGCGGAAGTGTTCCGCAACGTGGTGTTCGACCGTGCAAAGGGCATTTTCCAAGGCATGATCCGGGTG
GCACCCGATGCCCAGAAGACCGATGCGAAGATGGCGTGCAATACGCTGCTGATGTCCGACGATGGCGAGTTCTCGGCAAA
GCCGGAACTTGAAATCTTCGCCGACGACGTTCAGTGCGGTCACGGTGCGACGGTTGCCGATATCGATGACAACCATCTCT
ATTACCTGATGGCGCGCGGCGTGCCGCGGGCAAAGGCGCGGGCGATGCTCGTCAACGCCTTCGTCGCTGAAATCGTCGAG
GAACTGGAAGAAGAGAATCTGGTAGAGGCGCTGGAGGCGATCATCTCCGGCTGGCTGGAACATCATGCCTGA

Upstream 100 bases:

>100_bases
ATCCGCTCGGGCGACAAGGCTCTGGCGCTGGAGCTGGAAAACAATGGTTACGCCGACATCATCGGTGAAGCGGCCTAAGT
TTGGCCAGGAGGTGATGTCC

Downstream 100 bases:

>100_bases
GAGCGAACGCGCCGCAGTGGCGGCCCCTTATGACGTTGAAGCCGTGCGGAAGGATTTTCCAATCCTGTCGCGCGAGGTCT
ATGGCAAGCCGCTGACCTAT

Product: transport system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 423; Mature: 423

Protein sequence:

>423_residues
MNIQTTNRLTPAETALIDAYTAKFSELPGNGAVVAARDVLFDDLKTGGLPTRRIEAWHYTDLKTLLRAIPDDQPAPVIDK
QASLVAGSPVAYVLHGTANIGKIEDISVSSFAESLLDGTAATGLAEASKDDVIGRINGSFVRDGLTLDIPADAEIEKPIE
LQAIHGAGQVHSRFPVRFGKGSKATVIERHLSVTSDAALVSSVSDIVVEDGAEVTWIILQQQGAADIHLGQLRMKIGADA
KVRLFVINAGGKLVRQELRIDVDGEGTDLIVRGVNLLGGETHTDVTMVLGHNVPNTTSAEVFRNVVFDRAKGIFQGMIRV
APDAQKTDAKMACNTLLMSDDGEFSAKPELEIFADDVQCGHGATVADIDDNHLYYLMARGVPRAKARAMLVNAFVAEIVE
ELEEENLVEALEAIISGWLEHHA

Sequences:

>Translated_423_residues
MNIQTTNRLTPAETALIDAYTAKFSELPGNGAVVAARDVLFDDLKTGGLPTRRIEAWHYTDLKTLLRAIPDDQPAPVIDK
QASLVAGSPVAYVLHGTANIGKIEDISVSSFAESLLDGTAATGLAEASKDDVIGRINGSFVRDGLTLDIPADAEIEKPIE
LQAIHGAGQVHSRFPVRFGKGSKATVIERHLSVTSDAALVSSVSDIVVEDGAEVTWIILQQQGAADIHLGQLRMKIGADA
KVRLFVINAGGKLVRQELRIDVDGEGTDLIVRGVNLLGGETHTDVTMVLGHNVPNTTSAEVFRNVVFDRAKGIFQGMIRV
APDAQKTDAKMACNTLLMSDDGEFSAKPELEIFADDVQCGHGATVADIDDNHLYYLMARGVPRAKARAMLVNAFVAEIVE
ELEEENLVEALEAIISGWLEHHA
>Mature_423_residues
MNIQTTNRLTPAETALIDAYTAKFSELPGNGAVVAARDVLFDDLKTGGLPTRRIEAWHYTDLKTLLRAIPDDQPAPVIDK
QASLVAGSPVAYVLHGTANIGKIEDISVSSFAESLLDGTAATGLAEASKDDVIGRINGSFVRDGLTLDIPADAEIEKPIE
LQAIHGAGQVHSRFPVRFGKGSKATVIERHLSVTSDAALVSSVSDIVVEDGAEVTWIILQQQGAADIHLGQLRMKIGADA
KVRLFVINAGGKLVRQELRIDVDGEGTDLIVRGVNLLGGETHTDVTMVLGHNVPNTTSAEVFRNVVFDRAKGIFQGMIRV
APDAQKTDAKMACNTLLMSDDGEFSAKPELEIFADDVQCGHGATVADIDDNHLYYLMARGVPRAKARAMLVNAFVAEIVE
ELEEENLVEALEAIISGWLEHHA

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=376, Percent_Identity=28.4574468085106, Blast_Score=145, Evalue=6e-36,
Organism=Escherichia coli, GI87081955, Length=340, Percent_Identity=21.4705882352941, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 45383; Mature: 45383

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIQTTNRLTPAETALIDAYTAKFSELPGNGAVVAARDVLFDDLKTGGLPTRRIEAWHYT
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEHH
DLKTLLRAIPDDQPAPVIDKQASLVAGSPVAYVLHGTANIGKIEDISVSSFAESLLDGTA
HHHHHHHHCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCHH
ATGLAEASKDDVIGRINGSFVRDGLTLDIPADAEIEKPIELQAIHGAGQVHSRFPVRFGK
HCCCCCCCCCCEEEECCCCEEECCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEECC
GSKATVIERHLSVTSDAALVSSVSDIVVEDGAEVTWIILQQQGAADIHLGQLRMKIGADA
CCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCC
KVRLFVINAGGKLVRQELRIDVDGEGTDLIVRGVNLLGGETHTDVTMVLGHNVPNTTSAE
EEEEEEECCCCHHHHHHHEEEECCCCCEEEEECHHHHCCCCCCCEEEEEECCCCCCHHHH
VFRNVVFDRAKGIFQGMIRVAPDAQKTDAKMACNTLLMSDDGEFSAKPELEIFADDVQCG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEECCCCCCCCCCCEEEEECCCCCC
HGATVADIDDNHLYYLMARGVPRAKARAMLVNAFVAEIVEELEEENLVEALEAIISGWLE
CCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HHA
HCC
>Mature Secondary Structure
MNIQTTNRLTPAETALIDAYTAKFSELPGNGAVVAARDVLFDDLKTGGLPTRRIEAWHYT
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHCCCCCCCEEEEEEHH
DLKTLLRAIPDDQPAPVIDKQASLVAGSPVAYVLHGTANIGKIEDISVSSFAESLLDGTA
HHHHHHHHCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCHH
ATGLAEASKDDVIGRINGSFVRDGLTLDIPADAEIEKPIELQAIHGAGQVHSRFPVRFGK
HCCCCCCCCCCEEEECCCCEEECCEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEECC
GSKATVIERHLSVTSDAALVSSVSDIVVEDGAEVTWIILQQQGAADIHLGQLRMKIGADA
CCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCC
KVRLFVINAGGKLVRQELRIDVDGEGTDLIVRGVNLLGGETHTDVTMVLGHNVPNTTSAE
EEEEEEECCCCHHHHHHHEEEECCCCCEEEEECHHHHCCCCCCCEEEEEECCCCCCHHHH
VFRNVVFDRAKGIFQGMIRVAPDAQKTDAKMACNTLLMSDDGEFSAKPELEIFADDVQCG
HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHEEEEECCCCCCCCCCCEEEEECCCCCC
HGATVADIDDNHLYYLMARGVPRAKARAMLVNAFVAEIVEELEEENLVEALEAIISGWLE
CCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HHA
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 10322040 [H]