Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is sam [H]
Identifier: 159184813
GI number: 159184813
Start: 1545618
End: 1546514
Strand: Direct
Name: sam [H]
Synonym: Atu1558
Alternate gene names: 159184813
Gene position: 1545618-1546514 (Clockwise)
Preceding gene: 159184812
Following gene: 159184816
Centisome position: 54.39
GC content: 60.09
Gene sequence:
>897_bases ATGACCATCATGGCGGGCTGCATGCTGGTGCTGCCGGTCATGGATGCGATCGCCAAATACATGGCGGTGAGCGTCGGCAT GTCGCCGGCGCAGGTGACTTTCTACCGATTCTTTTTTCAGGTCCTGTGCACCCTGCCGCTGCTGCTGGTGGTGTCACCCG GGGCGCTGTTCAGCGCCAAACGACCATGGATGAACTGCCTGCGCGGCGTGCTGCATGCGTCCGCCAGCCTGATGTTCTTC GCCGCCGTCAAATACATGCCACTTGCCGATGTCTTCGCGATCTATTTCGTAGAGCCTTTCATGCTGACGATGATGTCAGC CCTCTTCCTCGGCGACAGAGTGGGCTGGAAACGCTGGACGGCGATCGTGGTGGGTTTTGGCGGTGCGCTGATCGTCATCC AGCCGAGTTTCGAAATCTTCGGCTGGACCTCGCTCCTGCCGGTCGCCTGCGCCTTTTTCTATACGCTTTATCTGTTCCTG AACCGCGCCATCGGTGATGCCGACAGCCCGCTTGTCATGCAGACCATGTCCGGAATCGCCGGCACGCTGTTCATGGCGGC AGCACTTTTTGCCGGCGATGCGCTGGGAGACAAGGACTTCGCTGTCTCGCTTCCCCAATCCGCTTTTGCGCTTGTCCTGC TGGTTCTGCTGGGATCGTTATCCGGCTACATGCACCTGCTGATCGTCAGGGCCTTCCGGCTGGCACCGCTGTCTTTGCTG GCGCCATTCCAGTATTTCGAGATCATCTCGGCGACGATTCTCGGCTATGCGCTGTTTTCGGACTTCCCCACCCCATCGAA ATGGCTCGGCATCCTCATCATCGTCGCATCCGGCCTGTTCATCATCTGGCGCGAGCGCCAGCAGCCCGCCTCCACCCCGC CGCTCGAAGGGCAATGA
Upstream 100 bases:
>100_bases GGGGCGGCCTTGCGGACGTCCCCTCCCGTTAGACCTTCTGGTCGAAAGCGTAGCCTGACCCATGACAAGCCAGACCGGTT TCAACGACATCGCCAAGGGC
Downstream 100 bases:
>100_bases CGCAGGCGGGCTCACACGCCTGAGGGCAGCGGCCCTTCATCGTGATGATCCTGCGCCTCCACGAGGCTGCCAAGCAGCCA CAGCGAAACCTCGGCCGCCT
Product: permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MTIMAGCMLVLPVMDAIAKYMAVSVGMSPAQVTFYRFFFQVLCTLPLLLVVSPGALFSAKRPWMNCLRGVLHASASLMFF AAVKYMPLADVFAIYFVEPFMLTMMSALFLGDRVGWKRWTAIVVGFGGALIVIQPSFEIFGWTSLLPVACAFFYTLYLFL NRAIGDADSPLVMQTMSGIAGTLFMAAALFAGDALGDKDFAVSLPQSAFALVLLVLLGSLSGYMHLLIVRAFRLAPLSLL APFQYFEIISATILGYALFSDFPTPSKWLGILIIVASGLFIIWRERQQPASTPPLEGQ
Sequences:
>Translated_298_residues MTIMAGCMLVLPVMDAIAKYMAVSVGMSPAQVTFYRFFFQVLCTLPLLLVVSPGALFSAKRPWMNCLRGVLHASASLMFF AAVKYMPLADVFAIYFVEPFMLTMMSALFLGDRVGWKRWTAIVVGFGGALIVIQPSFEIFGWTSLLPVACAFFYTLYLFL NRAIGDADSPLVMQTMSGIAGTLFMAAALFAGDALGDKDFAVSLPQSAFALVLLVLLGSLSGYMHLLIVRAFRLAPLSLL APFQYFEIISATILGYALFSDFPTPSKWLGILIIVASGLFIIWRERQQPASTPPLEGQ >Mature_297_residues TIMAGCMLVLPVMDAIAKYMAVSVGMSPAQVTFYRFFFQVLCTLPLLLVVSPGALFSAKRPWMNCLRGVLHASASLMFFA AVKYMPLADVFAIYFVEPFMLTMMSALFLGDRVGWKRWTAIVVGFGGALIVIQPSFEIFGWTSLLPVACAFFYTLYLFLN RAIGDADSPLVMQTMSGIAGTLFMAAALFAGDALGDKDFAVSLPQSAFALVLLVLLGSLSGYMHLLIVRAFRLAPLSLLA PFQYFEIISATILGYALFSDFPTPSKWLGILIIVASGLFIIWRERQQPASTPPLEGQ
Specific function: Transports S-adenosylmethionine [H]
COG id: COG0697
COG function: function code GER; Permeases of the drug/metabolite transporter (DMT) superfamily
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 32601; Mature: 32469
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 6.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIMAGCMLVLPVMDAIAKYMAVSVGMSPAQVTFYRFFFQVLCTLPLLLVVSPGALFSAK CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC RPWMNCLRGVLHASASLMFFAAVKYMPLADVFAIYFVEPFMLTMMSALFLGDRVGWKRWT CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH AIVVGFGGALIVIQPSFEIFGWTSLLPVACAFFYTLYLFLNRAIGDADSPLVMQTMSGIA HHEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GTLFMAAALFAGDALGDKDFAVSLPQSAFALVLLVLLGSLSGYMHLLIVRAFRLAPLSLL HHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH APFQYFEIISATILGYALFSDFPTPSKWLGILIIVASGLFIIWRERQQPASTPPLEGQ HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC >Mature Secondary Structure TIMAGCMLVLPVMDAIAKYMAVSVGMSPAQVTFYRFFFQVLCTLPLLLVVSPGALFSAK CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC RPWMNCLRGVLHASASLMFFAAVKYMPLADVFAIYFVEPFMLTMMSALFLGDRVGWKRWT CHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH AIVVGFGGALIVIQPSFEIFGWTSLLPVACAFFYTLYLFLNRAIGDADSPLVMQTMSGIA HHEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH GTLFMAAALFAGDALGDKDFAVSLPQSAFALVLLVLLGSLSGYMHLLIVRAFRLAPLSLL HHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH APFQYFEIISATILGYALFSDFPTPSKWLGILIIVASGLFIIWRERQQPASTPPLEGQ HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA