Click here to switch to the map view.

The map label for this gene is yidC

Identifier: 159184283

GI number: 159184283

Start: 376063

End: 377862

Strand: Reverse

Name: yidC

Synonym: Atu0384

Alternate gene names: 159184283

Gene position: 377862-376063 (Counterclockwise)

Preceding gene: 159184284

Following gene: 15887733

Centisome position: 13.3

GC content: 58.44

Gene sequence:

>1800_bases
ATGGAAAAGAACCGCAATTACTTCATCGCGATAGCCCTTTCGGTTGTCATCGTCCTCGCCTGGCAATTCCTTTACATGAA
TCCGCGCATCGAGCAGCAGCGCCGCGCCGAAGAGGCCCGCCAGGCGCAGCAGCAGACGACGCAGCAACAGCCGGCACCGG
GTGCCGCACCCGGCGCGACCGTCGAAGGTGCACCGCCCGCCTCCTCCACGCAGGCCGCCGCCACGGCGACACGGGAAGAA
GCGATCGCCAGGACCCAGCGCGTTGCTATCGACACCAACGCCATTGCCGGCTCGATCAACCTGACCGGCGCCCGTTTCGA
TGACATCCGGCTCAAGGGCTATCATGAGACCGTCGATGACTCGAGCCCGATCATCACGCTGTTTTCGCCTGCCGACACCA
AGGACGGTTACTTCACCGAACTCGGTTACGTTGCAGCACAGGAAGTCGGCGGCGTTCCCGGTCCGACGACCGTCTGGACG
CTTGCAAGCGGCGACAAGCTGACGGAAACCACCCCGGTCACCCTGACCTACACCAATTCCAAGGGTGTCGTTTTCTCGCG
TACGGTTTCGATCGACGAGCATTACATGCTCTCGATCGCCGACAAGGTCGAGAACCCCGGTCAGGCGGCGATTTCCTTCG
CGACCTACGGCCGCGTGACGCGCAACAACAAGCCGGTAATTCCCCCTGTATTCGTTATTCATGAGGGTTTTCTTGGCGTT
TCCGGCAAGGACGGCAGCCTGACGGAAAAGAAATATAAAGACGTCGAAGAGGAGCCGGTAACGGTTGCCAAGGCGACCGG
CGGCTGGCTCGGCATCACCGACAAATATTGGGCCGCGGCCATTGTTCCGCCGCAGACGACGCCGTTCGAAACCCGCTATT
CCCACATCACCGGCAATCAGCCGAGCTATCAGGCCGATTTCAAGAGCGACTCGATGACGGTCGAAGCCGGCCAGTCCATC
GAACTGAAGAGCCTCGTCTTCGCCGGTGCCAAGGAAGTGCCGCTGGTCGATCGTTACGAGACCGAATATTCCGTTCCGAA
GTTCGACCTTCTGATCGACTGGGGCTGGTTCTACTTCATCACCAAGCCGATGTTCAAAATGATGGACTTCTTCTTCCGTT
ATTTTGGCAATTTCGGCGTGGCCATCCTGCTCACAACCATTGTCGTCAAGGCGCTCTTCTTCCCGCTCGCCAGCAAGCAA
TACGCATCCATGGCGAACATGAAGCGCATGCAGCCGAAGATGGAAGAGCTGAAGGCCAAACATGGCGATGACCGTATGGC
CATGCAGCAGGCGATGATGCAGCTCTACAAGGAAGAGAAGATCAACCCGGTTGCCGGTTGCTGGCCGATGCTGCTGCAGA
TTCCGGTCTTCTTCGCGCTCTACAAGGTCATCTATGTCACCATCGAAATGCGGCATGCACCGTTCTTCGGCTGGATTCAC
GACCTTTCCGCGCCCGATCCGACCTCGCTGTTCAATCTGTTCGGCCTTCTGCCCTACGACGTGCCGCATTTCCTGATGAT
CGGCGTCTGGCCGCTCGTCATGGGCATCACGATGTTCCTGCAGATGCGCATGAACCCGACGCCGCCCGATCCGACACAGG
CGATGATCTTCACCTGGATGCCGCTGATCTTCACCTTCATGCTGGCCTCCTTCCCGGCTGGTCTGGTCATCTACTGGGCG
TGGAACAACACGCTCTCCATCAGCCAGCAGGCCCTCATCATGAAGCGTCACGGCGCCAAGATCGAACTGTTCGATAATAT
AAAAGGGCTGTTCAAACGAAAGCCGGTGCAATCGAAATGA

Upstream 100 bases:

>100_bases
TCGATACCGCCTTCCCGAAACTTCAGTCTCTCCTTATCGAGCGCATTGAAGGAACGGCGAAACCGAAACGGTCCCAGGAG
ACCCGCTCCAGGAAAGAATG

Downstream 100 bases:

>100_bases
GTGAGACCGGCACGGCAACCGAAAAGCCCCTGTTCGGGCGACCCTGGATTTTCATTCGCGGCGTTCCCGCGATGAAATTC
CTGCCGCCTGAGGGCCCGCC

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 599; Mature: 599

Protein sequence:

>599_residues
MEKNRNYFIAIALSVVIVLAWQFLYMNPRIEQQRRAEEARQAQQQTTQQQPAPGAAPGATVEGAPPASSTQAAATATREE
AIARTQRVAIDTNAIAGSINLTGARFDDIRLKGYHETVDDSSPIITLFSPADTKDGYFTELGYVAAQEVGGVPGPTTVWT
LASGDKLTETTPVTLTYTNSKGVVFSRTVSIDEHYMLSIADKVENPGQAAISFATYGRVTRNNKPVIPPVFVIHEGFLGV
SGKDGSLTEKKYKDVEEEPVTVAKATGGWLGITDKYWAAAIVPPQTTPFETRYSHITGNQPSYQADFKSDSMTVEAGQSI
ELKSLVFAGAKEVPLVDRYETEYSVPKFDLLIDWGWFYFITKPMFKMMDFFFRYFGNFGVAILLTTIVVKALFFPLASKQ
YASMANMKRMQPKMEELKAKHGDDRMAMQQAMMQLYKEEKINPVAGCWPMLLQIPVFFALYKVIYVTIEMRHAPFFGWIH
DLSAPDPTSLFNLFGLLPYDVPHFLMIGVWPLVMGITMFLQMRMNPTPPDPTQAMIFTWMPLIFTFMLASFPAGLVIYWA
WNNTLSISQQALIMKRHGAKIELFDNIKGLFKRKPVQSK

Sequences:

>Translated_599_residues
MEKNRNYFIAIALSVVIVLAWQFLYMNPRIEQQRRAEEARQAQQQTTQQQPAPGAAPGATVEGAPPASSTQAAATATREE
AIARTQRVAIDTNAIAGSINLTGARFDDIRLKGYHETVDDSSPIITLFSPADTKDGYFTELGYVAAQEVGGVPGPTTVWT
LASGDKLTETTPVTLTYTNSKGVVFSRTVSIDEHYMLSIADKVENPGQAAISFATYGRVTRNNKPVIPPVFVIHEGFLGV
SGKDGSLTEKKYKDVEEEPVTVAKATGGWLGITDKYWAAAIVPPQTTPFETRYSHITGNQPSYQADFKSDSMTVEAGQSI
ELKSLVFAGAKEVPLVDRYETEYSVPKFDLLIDWGWFYFITKPMFKMMDFFFRYFGNFGVAILLTTIVVKALFFPLASKQ
YASMANMKRMQPKMEELKAKHGDDRMAMQQAMMQLYKEEKINPVAGCWPMLLQIPVFFALYKVIYVTIEMRHAPFFGWIH
DLSAPDPTSLFNLFGLLPYDVPHFLMIGVWPLVMGITMFLQMRMNPTPPDPTQAMIFTWMPLIFTFMLASFPAGLVIYWA
WNNTLSISQQALIMKRHGAKIELFDNIKGLFKRKPVQSK
>Mature_599_residues
MEKNRNYFIAIALSVVIVLAWQFLYMNPRIEQQRRAEEARQAQQQTTQQQPAPGAAPGATVEGAPPASSTQAAATATREE
AIARTQRVAIDTNAIAGSINLTGARFDDIRLKGYHETVDDSSPIITLFSPADTKDGYFTELGYVAAQEVGGVPGPTTVWT
LASGDKLTETTPVTLTYTNSKGVVFSRTVSIDEHYMLSIADKVENPGQAAISFATYGRVTRNNKPVIPPVFVIHEGFLGV
SGKDGSLTEKKYKDVEEEPVTVAKATGGWLGITDKYWAAAIVPPQTTPFETRYSHITGNQPSYQADFKSDSMTVEAGQSI
ELKSLVFAGAKEVPLVDRYETEYSVPKFDLLIDWGWFYFITKPMFKMMDFFFRYFGNFGVAILLTTIVVKALFFPLASKQ
YASMANMKRMQPKMEELKAKHGDDRMAMQQAMMQLYKEEKINPVAGCWPMLLQIPVFFALYKVIYVTIEMRHAPFFGWIH
DLSAPDPTSLFNLFGLLPYDVPHFLMIGVWPLVMGITMFLQMRMNPTPPDPTQAMIFTWMPLIFTFMLASFPAGLVIYWA
WNNTLSISQQALIMKRHGAKIELFDNIKGLFKRKPVQSK

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1790140, Length=520, Percent_Identity=29.4230769230769, Blast_Score=248, Evalue=8e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OXAA_AGRT5 (Q8UIB3)

Other databases:

- EMBL:   AE007869
- PIR:   AH2623
- PIR:   G97405
- RefSeq:   NP_353415.2
- STRING:   Q8UIB3
- GeneID:   1132422
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0384
- eggNOG:   COG0706
- HOGENOM:   HBG507812
- OMA:   FVTIEMR
- PhylomeDB:   Q8UIB3
- ProtClustDB:   PRK01318
- BioCyc:   ATUM176299-1:ATU0384-MONOMER
- HAMAP:   MF_01810
- InterPro:   IPR019998
- InterPro:   IPR001708
- PANTHER:   PTHR12428
- PRINTS:   PR00701
- PRINTS:   PR01900
- TIGRFAMs:   TIGR03593
- TIGRFAMs:   TIGR03592

Pfam domain/function: PF02096 60KD_IMP

EC number: NA

Molecular weight: Translated: 67104; Mature: 67104

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xcb04160)-; HASH(0xc9bb260)-; HASH(0xc8cd3c4)-; HASH(0xc64a6cc)-; HASH(0xb477d7c)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKNRNYFIAIALSVVIVLAWQFLYMNPRIEQQRRAEEARQAQQQTTQQQPAPGAAPGAT
CCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
VEGAPPASSTQAAATATREEAIARTQRVAIDTNAIAGSINLTGARFDDIRLKGYHETVDD
CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCEEEEEEECCCEECCEEEECCCCCCCC
SSPIITLFSPADTKDGYFTELGYVAAQEVGGVPGPTTVWTLASGDKLTETTPVTLTYTNS
CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEECC
KGVVFSRTVSIDEHYMLSIADKVENPGQAAISFATYGRVTRNNKPVIPPVFVIHEGFLGV
CCEEEEEEEECCCHHEEEEHHHCCCCCHHEEEHHHHCCEECCCCCCCCCEEEEECCCEEC
SGKDGSLTEKKYKDVEEEPVTVAKATGGWLGITDKYWAAAIVPPQTTPFETRYSHITGNQ
CCCCCCCCHHHHCCCCCCCCEEEEECCCEECCCCCCCEEEECCCCCCCCCCHHCCCCCCC
PSYQADFKSDSMTVEAGQSIELKSLVFAGAKEVPLVDRYETEYSVPKFDLLIDWGWFYFI
CCCCCCCCCCCEEEECCCCEEHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHH
TKPMFKMMDFFFRYFGNFGVAILLTTIVVKALFFPLASKQYASMANMKRMQPKMEELKAK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHH
HGDDRMAMQQAMMQLYKEEKINPVAGCWPMLLQIPVFFALYKVIYVTIEMRHAPFFGWIH
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHH
DLSAPDPTSLFNLFGLLPYDVPHFLMIGVWPLVMGITMFLQMRMNPTPPDPTQAMIFTWM
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
PLIFTFMLASFPAGLVIYWAWNNTLSISQQALIMKRHGAKIELFDNIKGLFKRKPVQSK
HHHHHHHHHHCCCCEEEEEEECCEECCCHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCH
>Mature Secondary Structure
MEKNRNYFIAIALSVVIVLAWQFLYMNPRIEQQRRAEEARQAQQQTTQQQPAPGAAPGAT
CCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
VEGAPPASSTQAAATATREEAIARTQRVAIDTNAIAGSINLTGARFDDIRLKGYHETVDD
CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEECCCEEEEEEECCCEECCEEEECCCCCCCC
SSPIITLFSPADTKDGYFTELGYVAAQEVGGVPGPTTVWTLASGDKLTETTPVTLTYTNS
CCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEEECC
KGVVFSRTVSIDEHYMLSIADKVENPGQAAISFATYGRVTRNNKPVIPPVFVIHEGFLGV
CCEEEEEEEECCCHHEEEEHHHCCCCCHHEEEHHHHCCEECCCCCCCCCEEEEECCCEEC
SGKDGSLTEKKYKDVEEEPVTVAKATGGWLGITDKYWAAAIVPPQTTPFETRYSHITGNQ
CCCCCCCCHHHHCCCCCCCCEEEEECCCEECCCCCCCEEEECCCCCCCCCCHHCCCCCCC
PSYQADFKSDSMTVEAGQSIELKSLVFAGAKEVPLVDRYETEYSVPKFDLLIDWGWFYFI
CCCCCCCCCCCEEEECCCCEEHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHH
TKPMFKMMDFFFRYFGNFGVAILLTTIVVKALFFPLASKQYASMANMKRMQPKMEELKAK
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHH
HGDDRMAMQQAMMQLYKEEKINPVAGCWPMLLQIPVFFALYKVIYVTIEMRHAPFFGWIH
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHH
DLSAPDPTSLFNLFGLLPYDVPHFLMIGVWPLVMGITMFLQMRMNPTPPDPTQAMIFTWM
CCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
PLIFTFMLASFPAGLVIYWAWNNTLSISQQALIMKRHGAKIELFDNIKGLFKRKPVQSK
HHHHHHHHHHCCCCEEEEEEECCEECCCHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194