Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159184231
Identifier: 159184231
GI number: 159184231
Start: 250317
End: 250832
Strand: Reverse
Name: 159184231
Synonym: Atu0252
Alternate gene names: NA
Gene position: 250832-250317 (Counterclockwise)
Preceding gene: 159184232
Following gene: 159184230
Centisome position: 8.83
GC content: 58.91
Gene sequence:
>516_bases ATGGTAACGGGCGGGATCACGTCCCAGCCAATCGGCCATTACGAGTTCTGTCAGAAATACGCCGACGAGTGCAACATCCG CAGCAAGGTGACACCGCCGCCGCGCGTCACCGACTATGGCTGGGGCGTCATTCGCGAGATCAATACTTCCGTTAACACCA CCATCGTGGCGATGACCGACCAGGAAATCTACGGCAAGGACGAGGTCTGGGAATATCCGACGACCGCCGGCGACTGCGAA GATTTCGTGCTGCTGAAGCGCAAGAAGCTGATCGAGCGCGGGTTTTCCGTGGCCGATCTGCTGATCACCGTCGTCCGCAA GCCTGACGGAGAAGGCCATGCCGTGCTGACGCTTCGCACCACGGATGGAGATTATATTCTCGACAACCTCACCGACGACG TGAAGCTGTGGACCGACACCAACTACACCTATCTGAAGCGGCAGGCGTCCTTCAATACGGGCCGCTGGATTTCCATCGAA GATGGTCGCGACGTTCTGGTCGGCGCGTTGCGCTGA
Upstream 100 bases:
>100_bases CATGATGAACGCACCGCTGGCGCGTGCTCTGCTGTTTGCAGTTGCTGCCGGGCTAATGACTGCTGCCTCCGCCATGGCGG AAATCAAGGGAAGCCCTTCC
Downstream 100 bases:
>100_bases CACTCAAATTCCAAGTCTGATAGAATTCTGATTGAGCCCGCCATCGCGGGCTCTTTCTTTTTTTTCACGCGTTGCCGATG ATAATGCCGGCCGCCAGCAC
Product: hypothetical protein
Products: NA
Alternate protein names: Transglutaminase-Like Cysteine Peptidase BTLCP; Transglutaminase Family Protein Cysteine Peptidase Btlcp; And 4.1 Domain Protein; Peptide Signal; Signal Peptide; Transglutaminase Cysteine Peptidase BTLCP; Transglutaminase-Like Cysteine Peptidase; Transglutaminase-Like Protein; Bacterial Transglutaminase-Like Cysteine Peptidase
Number of amino acids: Translated: 171; Mature: 171
Protein sequence:
>171_residues MVTGGITSQPIGHYEFCQKYADECNIRSKVTPPPRVTDYGWGVIREINTSVNTTIVAMTDQEIYGKDEVWEYPTTAGDCE DFVLLKRKKLIERGFSVADLLITVVRKPDGEGHAVLTLRTTDGDYILDNLTDDVKLWTDTNYTYLKRQASFNTGRWISIE DGRDVLVGALR
Sequences:
>Translated_171_residues MVTGGITSQPIGHYEFCQKYADECNIRSKVTPPPRVTDYGWGVIREINTSVNTTIVAMTDQEIYGKDEVWEYPTTAGDCE DFVLLKRKKLIERGFSVADLLITVVRKPDGEGHAVLTLRTTDGDYILDNLTDDVKLWTDTNYTYLKRQASFNTGRWISIE DGRDVLVGALR >Mature_171_residues MVTGGITSQPIGHYEFCQKYADECNIRSKVTPPPRVTDYGWGVIREINTSVNTTIVAMTDQEIYGKDEVWEYPTTAGDCE DFVLLKRKKLIERGFSVADLLITVVRKPDGEGHAVLTLRTTDGDYILDNLTDDVKLWTDTNYTYLKRQASFNTGRWISIE DGRDVLVGALR
Specific function: Unknown
COG id: COG3672
COG function: function code S; Predicted periplasmic protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19343; Mature: 19343
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVTGGITSQPIGHYEFCQKYADECNIRSKVTPPPRVTDYGWGVIREINTSVNTTIVAMTD CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEC QEIYGKDEVWEYPTTAGDCEDFVLLKRKKLIERGFSVADLLITVVRKPDGEGHAVLTLRT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEEE TDGDYILDNLTDDVKLWTDTNYTYLKRQASFNTGRWISIEDGRDVLVGALR CCCCEEECCCCCCEEEEECCCEEEEEEECCCCCCCEEEEECCCEEEEEECC >Mature Secondary Structure MVTGGITSQPIGHYEFCQKYADECNIRSKVTPPPRVTDYGWGVIREINTSVNTTIVAMTD CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEC QEIYGKDEVWEYPTTAGDCEDFVLLKRKKLIERGFSVADLLITVVRKPDGEGHAVLTLRT CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEEEEEE TDGDYILDNLTDDVKLWTDTNYTYLKRQASFNTGRWISIEDGRDVLVGALR CCCCEEECCCCCCEEEEECCCEEEEEEECCCCCCCEEEEECCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA