Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184230
Identifier: 159184230
GI number: 159184230
Start: 248655
End: 249062
Strand: Reverse
Name: 159184230
Synonym: Atu0250
Alternate gene names: NA
Gene position: 249062-248655 (Counterclockwise)
Preceding gene: 159184231
Following gene: 15887599
Centisome position: 8.76
GC content: 55.88
Gene sequence:
>408_bases ATGGCTGAGATCGGCGTCGACGCCGCTTTCATCGATCTGCTGGTGGAGACCTTTTACGGCCGTGTTCTTGAACACCAGAC GCTTGGCCCTGTTTTCGATGCACGGCTTGCCGGGCGCTGGCCGGAACATATGGCCAGGATGAAACAGTTCTGGACGGCTA TCGCCTTCAAGAATGGTAGCTATGGTGGCAAACCCGTGCAGGCGCATCTGGGGGTGCAAGGCATGTCGGCGGAGCTTTTT CCTCAATGGCTCGCACTTTTTTCAGTGACGCTCGATGACATCGCACCGAGCAGGAAGGCGCATGACTGGTTCATGGAAAC GGCGGAACGCATCGCCAGAAGCCTGACGCTTTCGCTGTTTTATAATCCTGCAATGGATGACCCGGCGGTAAAACGCAGTA GGTCTTAA
Upstream 100 bases:
>100_bases CGCTGCGCGGTAAATTTGCCAAAAAGGAAAGACGATGCAGTATCAAATTGCAGGGCGAGCCGTCCACAATGCGGAAATTC AGGACAGAGCGGAAAAGGCC
Downstream 100 bases:
>100_bases GGCAAAGAAAGAGCCACGCGAGTTTCAATATTCCCTCTTGATGGCCGCAGGGATAAATGTTTAGTAGCCAGCGGGAGGCG TACCGTGCGGTTCGCCTGTA
Product: hypothetical protein
Products: NA
Alternate protein names: SEC-Independent Protein Translocase Protein TatC; Globin-Like Protein; Truncated Hemoglobin-Like Protein; Protozoan/Cyanobacterial Globin Family Protein; Truncated Hemoglobin; Sec-Independent Protein Translocase Protein TatC; Sec-Independent Protein Translocase; Truncated Hemoglobin Protein; Globin Family Protein; Sec-Independent Protein Translocase Protein Tatc; Truncated Hemoglobins; Hemoglobin; Sec-Independent Protein Translocase Protein
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MAEIGVDAAFIDLLVETFYGRVLEHQTLGPVFDARLAGRWPEHMARMKQFWTAIAFKNGSYGGKPVQAHLGVQGMSAELF PQWLALFSVTLDDIAPSRKAHDWFMETAERIARSLTLSLFYNPAMDDPAVKRSRS
Sequences:
>Translated_135_residues MAEIGVDAAFIDLLVETFYGRVLEHQTLGPVFDARLAGRWPEHMARMKQFWTAIAFKNGSYGGKPVQAHLGVQGMSAELF PQWLALFSVTLDDIAPSRKAHDWFMETAERIARSLTLSLFYNPAMDDPAVKRSRS >Mature_134_residues AEIGVDAAFIDLLVETFYGRVLEHQTLGPVFDARLAGRWPEHMARMKQFWTAIAFKNGSYGGKPVQAHLGVQGMSAELFP QWLALFSVTLDDIAPSRKAHDWFMETAERIARSLTLSLFYNPAMDDPAVKRSRS
Specific function: Unknown
COG id: COG2346
COG function: function code R; Truncated hemoglobins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15188; Mature: 15056
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEIGVDAAFIDLLVETFYGRVLEHQTLGPVFDARLAGRWPEHMARMKQFWTAIAFKNGS CCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC YGGKPVQAHLGVQGMSAELFPQWLALFSVTLDDIAPSRKAHDWFMETAERIARSLTLSLF CCCCCEEHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH YNPAMDDPAVKRSRS CCCCCCCHHHHCCCC >Mature Secondary Structure AEIGVDAAFIDLLVETFYGRVLEHQTLGPVFDARLAGRWPEHMARMKQFWTAIAFKNGS CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC YGGKPVQAHLGVQGMSAELFPQWLALFSVTLDDIAPSRKAHDWFMETAERIARSLTLSLF CCCCCEEHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH YNPAMDDPAVKRSRS CCCCCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA