Definition Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence.
Accession NC_003065
Length 214,233

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The map label for this gene is ycaN [H]

Identifier: 159161967

GI number: 159161967

Start: 95986

End: 96948

Strand: Direct

Name: ycaN [H]

Synonym: Atu6080

Alternate gene names: 159161967

Gene position: 95986-96948 (Clockwise)

Preceding gene: 16119877

Following gene: 159161968

Centisome position: 44.8

GC content: 55.76

Gene sequence:

>963_bases
ATGCGGGGCACCGACTTTGGCAATCTGCGTGCTTTTATGATGATCGTGGATTCCGGCAGTTTCGTTCGGGCCGCAGCAGC
CCTGAAAATCGCGCCTTCCACTCTCAGCTACACAATCCAGGTTCTGGAAGGGCGGCTTGGGACGAAACTGCTGCAGCGTA
CGACGAGAACGGTCAGATTGACCGAAGCTGGAAGTCGATTGGCCCGGCGCCTCGGGCCAATGATGTCCGAATTCGACACC
TTGATGGAGGACCTGACGGAGCCTCGGGAAAAGCCCTCCGGGACGCTGAAGCTTTGCGTCCCGCGTATGCCGATGCGGCT
TTATATGGAACCGCTTCTTAATGGCTTCGAAGCCGCTTACACGGACATTACCATCGATCTCACGATTGGAGATGTGCTCG
TCGACATCGCGGTGTCCGGGTTTGATGCTGCGGTCATCCCTAACCGGAGCATCCAGGACGATCTGGTCTCTATTCGGTTA
GGACCGGAATTAAAGCGCATTGTCTACGCCTCACCAAGATATCTCGCCCGTTTCGGGGCGCCCTCTGAACCGGGAGACCT
CGTTCATCATAATTGCATCAACTTTCGAGGCCCCCACACCGGAGCAATCTACCCCTGGGAGTTTCAGCGCGGTCAAGAAC
GCTTCGAGGTTGCTGTCAGCGGTTCGCTCATCGTGTCGGATTCGACCTACACACTTTCAGCCGCTCTCAGCGGCAAGGGC
ATAGGCTATGGCATAGAGCCAATTTCGAAGCCTTTTCTGGACGACGGCAGTCTGATTTCACTCCTGGAAGGCTGGGTCGC
CCCCCATCCGGGGTTCATGCTGTGTTATCCAAAGAACCGGAATATCTCCGCCGCACTCAAGGCATTGCTTTCGTATGTAA
GAAAGCAGAGCCGTGCCGGCAGTAGACTGAACGACGACCGTGTGAATGGTCGCCTTGGATCTACTCATATTGTTCGAACA
TGA

Upstream 100 bases:

>100_bases
CTATTTAGGAAGCAAAAGTCTACTAATTATATAGACTTTGGTGCATATTCCTGTCGATTATATGTTTGTTATCGATTTCA
CTATTCGAGAGGTTCGAAGA

Downstream 100 bases:

>100_bases
AGCGCGCTCTTGAATGTCAGAAAAATATAGCCTAATTTCTGACGCATGAAACCCCTCGCGACATCAGTTCCAGACCTAAT
TATGAAGCGTGCCCGTGCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MRGTDFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAGSRLARRLGPMMSEFDT
LMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDITIDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRL
GPELKRIVYASPRYLARFGAPSEPGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKG
IGYGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSRAGSRLNDDRVNGRLGSTHIVRT

Sequences:

>Translated_320_residues
MRGTDFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAGSRLARRLGPMMSEFDT
LMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDITIDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRL
GPELKRIVYASPRYLARFGAPSEPGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKG
IGYGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSRAGSRLNDDRVNGRLGSTHIVRT
>Mature_320_residues
MRGTDFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAGSRLARRLGPMMSEFDT
LMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDITIDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRL
GPELKRIVYASPRYLARFGAPSEPGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKG
IGYGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSRAGSRLNDDRVNGRLGSTHIVRT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=39.4557823129252, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=31.2925170068027, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1789440, Length=256, Percent_Identity=31.25, Blast_Score=124, Evalue=8e-30,
Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=31.1418685121107, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=28.135593220339, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=25.085910652921, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789639, Length=189, Percent_Identity=32.2751322751323, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788706, Length=263, Percent_Identity=23.9543726235741, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=129, Percent_Identity=34.8837209302326, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789173, Length=270, Percent_Identity=24.8148148148148, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI157672245, Length=120, Percent_Identity=30.8333333333333, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35178; Mature: 35178

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGTDFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRL
CCCCCCCCCEEEEEEEECCCHHHHHHHEEECCHHHHHHHHHHHCHHHHHHHHHHHHEEEE
TEAGSRLARRLGPMMSEFDTLMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAY
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
TDITIDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRLGPELKRIVYASPRYLARFGA
EEEEEEEEHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCHHHHHEECCCHHHHHCCC
PSEPGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKG
CCCCCCHHHHCCCCCCCCCCCCEECHHHHCCCCCEEEEEECEEEEECCCEEEEEEECCCC
IGYGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSRAG
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC
SRLNDDRVNGRLGSTHIVRT
CCCCCHHCCCCCCCEEEEEC
>Mature Secondary Structure
MRGTDFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRL
CCCCCCCCCEEEEEEEECCCHHHHHHHEEECCHHHHHHHHHHHCHHHHHHHHHHHHEEEE
TEAGSRLARRLGPMMSEFDTLMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAY
HHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
TDITIDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRLGPELKRIVYASPRYLARFGA
EEEEEEEEHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCHHHHHEECCCHHHHHCCC
PSEPGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKG
CCCCCCHHHHCCCCCCCCCCCCEECHHHHCCCCCEEEEEECEEEEECCCEEEEEEECCCC
IGYGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSRAG
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC
SRLNDDRVNGRLGSTHIVRT
CCCCCHHCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]