Definition | Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence. |
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Accession | NC_003065 |
Length | 214,233 |
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The map label for this gene is ycaN [H]
Identifier: 159161967
GI number: 159161967
Start: 95986
End: 96948
Strand: Direct
Name: ycaN [H]
Synonym: Atu6080
Alternate gene names: 159161967
Gene position: 95986-96948 (Clockwise)
Preceding gene: 16119877
Following gene: 159161968
Centisome position: 44.8
GC content: 55.76
Gene sequence:
>963_bases ATGCGGGGCACCGACTTTGGCAATCTGCGTGCTTTTATGATGATCGTGGATTCCGGCAGTTTCGTTCGGGCCGCAGCAGC CCTGAAAATCGCGCCTTCCACTCTCAGCTACACAATCCAGGTTCTGGAAGGGCGGCTTGGGACGAAACTGCTGCAGCGTA CGACGAGAACGGTCAGATTGACCGAAGCTGGAAGTCGATTGGCCCGGCGCCTCGGGCCAATGATGTCCGAATTCGACACC TTGATGGAGGACCTGACGGAGCCTCGGGAAAAGCCCTCCGGGACGCTGAAGCTTTGCGTCCCGCGTATGCCGATGCGGCT TTATATGGAACCGCTTCTTAATGGCTTCGAAGCCGCTTACACGGACATTACCATCGATCTCACGATTGGAGATGTGCTCG TCGACATCGCGGTGTCCGGGTTTGATGCTGCGGTCATCCCTAACCGGAGCATCCAGGACGATCTGGTCTCTATTCGGTTA GGACCGGAATTAAAGCGCATTGTCTACGCCTCACCAAGATATCTCGCCCGTTTCGGGGCGCCCTCTGAACCGGGAGACCT CGTTCATCATAATTGCATCAACTTTCGAGGCCCCCACACCGGAGCAATCTACCCCTGGGAGTTTCAGCGCGGTCAAGAAC GCTTCGAGGTTGCTGTCAGCGGTTCGCTCATCGTGTCGGATTCGACCTACACACTTTCAGCCGCTCTCAGCGGCAAGGGC ATAGGCTATGGCATAGAGCCAATTTCGAAGCCTTTTCTGGACGACGGCAGTCTGATTTCACTCCTGGAAGGCTGGGTCGC CCCCCATCCGGGGTTCATGCTGTGTTATCCAAAGAACCGGAATATCTCCGCCGCACTCAAGGCATTGCTTTCGTATGTAA GAAAGCAGAGCCGTGCCGGCAGTAGACTGAACGACGACCGTGTGAATGGTCGCCTTGGATCTACTCATATTGTTCGAACA TGA
Upstream 100 bases:
>100_bases CTATTTAGGAAGCAAAAGTCTACTAATTATATAGACTTTGGTGCATATTCCTGTCGATTATATGTTTGTTATCGATTTCA CTATTCGAGAGGTTCGAAGA
Downstream 100 bases:
>100_bases AGCGCGCTCTTGAATGTCAGAAAAATATAGCCTAATTTCTGACGCATGAAACCCCTCGCGACATCAGTTCCAGACCTAAT TATGAAGCGTGCCCGTGCCG
Product: LysR family transcriptional regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MRGTDFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAGSRLARRLGPMMSEFDT LMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDITIDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRL GPELKRIVYASPRYLARFGAPSEPGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKG IGYGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSRAGSRLNDDRVNGRLGSTHIVRT
Sequences:
>Translated_320_residues MRGTDFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAGSRLARRLGPMMSEFDT LMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDITIDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRL GPELKRIVYASPRYLARFGAPSEPGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKG IGYGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSRAGSRLNDDRVNGRLGSTHIVRT >Mature_320_residues MRGTDFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRLTEAGSRLARRLGPMMSEFDT LMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAYTDITIDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRL GPELKRIVYASPRYLARFGAPSEPGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKG IGYGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSRAGSRLNDDRVNGRLGSTHIVRT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1787128, Length=294, Percent_Identity=39.4557823129252, Blast_Score=222, Evalue=2e-59, Organism=Escherichia coli, GI1787589, Length=294, Percent_Identity=31.2925170068027, Blast_Score=167, Evalue=6e-43, Organism=Escherichia coli, GI1789440, Length=256, Percent_Identity=31.25, Blast_Score=124, Evalue=8e-30, Organism=Escherichia coli, GI145693193, Length=289, Percent_Identity=31.1418685121107, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1786401, Length=295, Percent_Identity=28.135593220339, Blast_Score=116, Evalue=1e-27, Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=25.085910652921, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1789639, Length=189, Percent_Identity=32.2751322751323, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788706, Length=263, Percent_Identity=23.9543726235741, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790208, Length=129, Percent_Identity=34.8837209302326, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1789173, Length=270, Percent_Identity=24.8148148148148, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI157672245, Length=120, Percent_Identity=30.8333333333333, Blast_Score=61, Evalue=9e-11,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000847 - InterPro: IPR005119 - InterPro: IPR011991 [H]
Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]
EC number: NA
Molecular weight: Translated: 35178; Mature: 35178
Theoretical pI: Translated: 9.48; Mature: 9.48
Prosite motif: PS50931 HTH_LYSR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGTDFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRL CCCCCCCCCEEEEEEEECCCHHHHHHHEEECCHHHHHHHHHHHCHHHHHHHHHHHHEEEE TEAGSRLARRLGPMMSEFDTLMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAY HHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH TDITIDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRLGPELKRIVYASPRYLARFGA EEEEEEEEHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCHHHHHEECCCHHHHHCCC PSEPGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKG CCCCCCHHHHCCCCCCCCCCCCEECHHHHCCCCCEEEEEECEEEEECCCEEEEEEECCCC IGYGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSRAG CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC SRLNDDRVNGRLGSTHIVRT CCCCCHHCCCCCCCEEEEEC >Mature Secondary Structure MRGTDFGNLRAFMMIVDSGSFVRAAAALKIAPSTLSYTIQVLEGRLGTKLLQRTTRTVRL CCCCCCCCCEEEEEEEECCCHHHHHHHEEECCHHHHHHHHHHHCHHHHHHHHHHHHEEEE TEAGSRLARRLGPMMSEFDTLMEDLTEPREKPSGTLKLCVPRMPMRLYMEPLLNGFEAAY HHHHHHHHHHHHHHHHHHHHHHHHHHCHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH TDITIDLTIGDVLVDIAVSGFDAAVIPNRSIQDDLVSIRLGPELKRIVYASPRYLARFGA EEEEEEEEHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEECCHHHHHEECCCHHHHHCCC PSEPGDLVHHNCINFRGPHTGAIYPWEFQRGQERFEVAVSGSLIVSDSTYTLSAALSGKG CCCCCCHHHHCCCCCCCCCCCCEECHHHHCCCCCEEEEEECEEEEECCCEEEEEEECCCC IGYGIEPISKPFLDDGSLISLLEGWVAPHPGFMLCYPKNRNISAALKALLSYVRKQSRAG CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC SRLNDDRVNGRLGSTHIVRT CCCCCHHCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]