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The map label for this gene is yjbJ [H]

Identifier: 159046512

GI number: 159046512

Start: 33535

End: 34149

Strand: Direct

Name: yjbJ [H]

Synonym: Dshi_3973

Alternate gene names: 159046512

Gene position: 33535-34149 (Clockwise)

Preceding gene: 159046511

Following gene: 159046513

Centisome position: 26.55

GC content: 62.28

Gene sequence:

>615_bases
ATGGTGCTGGTCATGGAGAGCGATGGCTCTCTGACCCCGTCCCGCTCCCAGAACAGCTTTGCCCGCAATTACAATGATGG
CATTGGACAGGGGTCGGCGGCTGATGGGCTGGCGATACTCGGTGAGACTGACCTTGGGCCAGACGAAGTTCAGGTTGCTG
CCCTTGCGCGGCCTGCTCCCCTACCCCGCGCTGAAGTTCTAAATGCCATAGAAGCCACCGCCCTTCGCTATGCCGGGCAC
CCTGCGCTGCGCCGCGCAGACCTCTCGGTTCGTGATTGGCTGACGCTCTACCGTGCCAATATCGAAGTCGAGAGCGCCTA
TCGGCAGGATGCGGTCTCGAGTGCTGGCGCCATTGGCCTTGGTCAATTGATGCCCGCGACGGCGCGCGATCTTGGCGTCG
ATCCGCGTGATCCCCTTCAAAACCTCGACGGCTCCGCCCGCTATCTTGCGATGATGCTGAACACGTTTGGCGATCCGCGT
CTTGCCCTCGCGGCCTACAACGCCGGGCCGGACGCTGTGCGCCAGTACGGCGGCATTCCCCCCTACAGAGAAACCCAGAA
CCACGTGGCCCGTGTCATGGCCGTCGTGGCCCGATTGGAAGGATCAAATTCATGA

Upstream 100 bases:

>100_bases
GAAGGCCAGCGGACGACGCACAAGCTGGCTGCGACCGACAAGGGCAGCAGCAAGTAGCCTTCTCCTTTTCTGGTATCTCG
CGGGTCCCGCCACTGCGCAA

Downstream 100 bases:

>100_bases
GACAGATTTCAAACCTCTTTGTCGCCTCACTGGCGCTATTCCTGCTCATTGCCGAGCCCGCCCTTGCCCAAAGCATCGAT
CTATCCCCGATCCAAAGCTT

Product: lytic transglycosylase catalytic

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MVLVMESDGSLTPSRSQNSFARNYNDGIGQGSAADGLAILGETDLGPDEVQVAALARPAPLPRAEVLNAIEATALRYAGH
PALRRADLSVRDWLTLYRANIEVESAYRQDAVSSAGAIGLGQLMPATARDLGVDPRDPLQNLDGSARYLAMMLNTFGDPR
LALAAYNAGPDAVRQYGGIPPYRETQNHVARVMAVVARLEGSNS

Sequences:

>Translated_204_residues
MVLVMESDGSLTPSRSQNSFARNYNDGIGQGSAADGLAILGETDLGPDEVQVAALARPAPLPRAEVLNAIEATALRYAGH
PALRRADLSVRDWLTLYRANIEVESAYRQDAVSSAGAIGLGQLMPATARDLGVDPRDPLQNLDGSARYLAMMLNTFGDPR
LALAAYNAGPDAVRQYGGIPPYRETQNHVARVMAVVARLEGSNS
>Mature_204_residues
MVLVMESDGSLTPSRSQNSFARNYNDGIGQGSAADGLAILGETDLGPDEVQVAALARPAPLPRAEVLNAIEATALRYAGH
PALRRADLSVRDWLTLYRANIEVESAYRQDAVSSAGAIGLGQLMPATARDLGVDPRDPLQNLDGSARYLAMMLNTFGDPR
LALAAYNAGPDAVRQYGGIPPYRETQNHVARVMAVVARLEGSNS

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 21690; Mature: 21690

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLVMESDGSLTPSRSQNSFARNYNDGIGQGSAADGLAILGETDLGPDEVQVAALARPAP
CEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHEEHHHHCCCCC
LPRAEVLNAIEATALRYAGHPALRRADLSVRDWLTLYRANIEVESAYRQDAVSSAGAIGL
CCHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCH
GQLMPATARDLGVDPRDPLQNLDGSARYLAMMLNTFGDPRLALAAYNAGPDAVRQYGGIP
HHHCCHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCC
PYRETQNHVARVMAVVARLEGSNS
CCHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MVLVMESDGSLTPSRSQNSFARNYNDGIGQGSAADGLAILGETDLGPDEVQVAALARPAP
CEEEECCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCEEEEECCCCCHHHEEHHHHCCCCC
LPRAEVLNAIEATALRYAGHPALRRADLSVRDWLTLYRANIEVESAYRQDAVSSAGAIGL
CCHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCH
GQLMPATARDLGVDPRDPLQNLDGSARYLAMMLNTFGDPRLALAAYNAGPDAVRQYGGIP
HHHCCHHHHHCCCCCCCHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHCCCC
PYRETQNHVARVMAVVARLEGSNS
CCHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]