Definition Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence.
Accession NC_009957
Length 126,304

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The map label for this gene is 159046511

Identifier: 159046511

GI number: 159046511

Start: 33138

End: 33491

Strand: Direct

Name: 159046511

Synonym: Dshi_3972

Alternate gene names: NA

Gene position: 33138-33491 (Clockwise)

Preceding gene: 159046507

Following gene: 159046512

Centisome position: 26.24

GC content: 56.78

Gene sequence:

>354_bases
ATGAACTGGGACATCGAAGCACCAAATGTGGTTACGGAAGCACGTTTCCGCGAACTCGTGGAAAGTGGCTATAGCGCTGA
AATCCTGTGCCAGGAATCGGCACACAAGAAGGGCCCGAGCTATTACGGGGTCTGGATCATGCGTGTCGTCTCTGACGAGG
GTGTGGAAAAGCTGCTGGTCACGGCCCGAACCCGAACGACCTACAACGACATCAAGATCCGCGAATTCAAAACCATCACG
GGCGTGGTCTCCTTCCTTATCGGCATCGGTTTCTCCCATGCCGATGTCCCGCTCGAAGAAGGCCAGCGGACGACGCACAA
GCTGGCTGCGACCGACAAGGGCAGCAGCAAGTAG

Upstream 100 bases:

>100_bases
CTGCAATATATCCTTGCAGTTAATAATATACTATCGTAACTCTGGGCTTCAAGTGGGAATGCCCGGATGTTGCGCGTTTG
AAGAAAGCGTGAGCCGGGCC

Downstream 100 bases:

>100_bases
CCTTCTCCTTTTCTGGTATCTCGCGGGTCCCGCCACTGCGCAAATGGTGCTGGTCATGGAGAGCGATGGCTCTCTGACCC
CGTCCCGCTCCCAGAACAGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MNWDIEAPNVVTEARFRELVESGYSAEILCQESAHKKGPSYYGVWIMRVVSDEGVEKLLVTARTRTTYNDIKIREFKTIT
GVVSFLIGIGFSHADVPLEEGQRTTHKLAATDKGSSK

Sequences:

>Translated_117_residues
MNWDIEAPNVVTEARFRELVESGYSAEILCQESAHKKGPSYYGVWIMRVVSDEGVEKLLVTARTRTTYNDIKIREFKTIT
GVVSFLIGIGFSHADVPLEEGQRTTHKLAATDKGSSK
>Mature_117_residues
MNWDIEAPNVVTEARFRELVESGYSAEILCQESAHKKGPSYYGVWIMRVVSDEGVEKLLVTARTRTTYNDIKIREFKTIT
GVVSFLIGIGFSHADVPLEEGQRTTHKLAATDKGSSK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13078; Mature: 13078

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWDIEAPNVVTEARFRELVESGYSAEILCQESAHKKGPSYYGVWIMRVVSDEGVEKLLV
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHH
TARTRTTYNDIKIREFKTITGVVSFLIGIGFSHADVPLEEGQRTTHKLAATDKGSSK
HHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHCCCCCCCC
>Mature Secondary Structure
MNWDIEAPNVVTEARFRELVESGYSAEILCQESAHKKGPSYYGVWIMRVVSDEGVEKLLV
CCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHH
TARTRTTYNDIKIREFKTITGVVSFLIGIGFSHADVPLEEGQRTTHKLAATDKGSSK
HHCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA