Click here to switch to the map view.

The map label for this gene is 159046513

Identifier: 159046513

GI number: 159046513

Start: 34146

End: 34439

Strand: Direct

Name: 159046513

Synonym: Dshi_3974

Alternate gene names: NA

Gene position: 34146-34439 (Clockwise)

Preceding gene: 159046512

Following gene: 159046514

Centisome position: 27.03

GC content: 59.18

Gene sequence:

>294_bases
ATGAGACAGATTTCAAACCTCTTTGTCGCCTCACTGGCGCTATTCCTGCTCATTGCCGAGCCCGCCCTTGCCCAAAGCAT
CGATCTATCCCCGATCCAAAGCTTGTTGCAGGGCATTGTCGATGCTCTAACCGGCCCGCTCGGCGTCGTGATCGCCACAC
TCGCGGTCCTTGGCGTTTTCTTGAGCTGGTTCTTCAATATCATCGATCTGCGTCAGGCGCTCTGGGTCCTCGTCGGGATC
GCTGGTGTTGCGGCCGCTCCCACCATCGTCGCCGCGGTTTTCGCCGGTGGCTGA

Upstream 100 bases:

>100_bases
ACGCTGTGCGCCAGTACGGCGGCATTCCCCCCTACAGAGAAACCCAGAACCACGTGGCCCGTGTCATGGCCGTCGTGGCC
CGATTGGAAGGATCAAATTC

Downstream 100 bases:

>100_bases
GCGCGCGCCTCTCTTTCTGGGCCTCGTGCGCCCTCCGAAGCTTCTGGGCCTGCCCATCATGTACGCGATGGTCTGGCTTT
TCGGCTCGGTGCTCTTGTTC

Product: conjugal transfer protein TrbC

Products: NA

Alternate protein names: Virb2 Type IV Secretion

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MRQISNLFVASLALFLLIAEPALAQSIDLSPIQSLLQGIVDALTGPLGVVIATLAVLGVFLSWFFNIIDLRQALWVLVGI
AGVAAAPTIVAAVFAGG

Sequences:

>Translated_97_residues
MRQISNLFVASLALFLLIAEPALAQSIDLSPIQSLLQGIVDALTGPLGVVIATLAVLGVFLSWFFNIIDLRQALWVLVGI
AGVAAAPTIVAAVFAGG
>Mature_97_residues
MRQISNLFVASLALFLLIAEPALAQSIDLSPIQSLLQGIVDALTGPLGVVIATLAVLGVFLSWFFNIIDLRQALWVLVGI
AGVAAAPTIVAAVFAGG

Specific function: Unknown

COG id: COG3838

COG function: function code U; Type IV secretory pathway, VirB2 components (pilins)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10014; Mature: 10014

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQISNLFVASLALFLLIAEPALAQSIDLSPIQSLLQGIVDALTGPLGVVIATLAVLGVF
CCHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LSWFFNIIDLRQALWVLVGIAGVAAAPTIVAAVFAGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRQISNLFVASLALFLLIAEPALAQSIDLSPIQSLLQGIVDALTGPLGVVIATLAVLGVF
CCHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LSWFFNIIDLRQALWVLVGIAGVAAAPTIVAAVFAGG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA