| Definition | Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence. |
|---|---|
| Accession | NC_009957 |
| Length | 126,304 |
Click here to switch to the map view.
The map label for this gene is zitB [C]
Identifier: 159046507
GI number: 159046507
Start: 30885
End: 31736
Strand: Direct
Name: zitB [C]
Synonym: Dshi_3968
Alternate gene names: 159046507
Gene position: 30885-31736 (Clockwise)
Preceding gene: 159046505
Following gene: 159046511
Centisome position: 24.45
GC content: 64.2
Gene sequence:
>852_bases ATGAGCCAGCCCGATAACAGCAAGTTGGCGACAGCCTCCTCCCCGATCCGAATGCGGGTGCAAGGCATGGACTGCGCGAA AGATGCCGCCGAGATCGAGCGCGCGGCCCGGTCTGCGGGCGTGGCCGAAGGCGACGTGAAAGTGTCCGCCGCCACCCACA TCATGACATTGCGGATCGCGGACGGCGATCTGCCGAAAGTGCGGCCCGCGCTCGACGCGACCGGCTACGGTTTCGAGAAG ATCGAGGACGGCGATACATCGTCCGATCCGGCCTACAAGGACCCGAGCTATCGCCGCGCGCTCTGGATCGTGGTCGCGCT CAATCTCGGATACGGCGTGGTCGAAATGTTCGGCGGGTTCCTGTCCGGTTCGCAGGCGCTGAAGGCAGACGCGCTCGATT TTCTGGGCGATGGTGCGATCACGTTTCTGGGCCTGCTCGCCATCGGCTGGAGCCTGACATGGCGGGCGCGGTCGGCGATG ATCCAAGGCGTGTTTCTGGGCCTTCTGGGCCTTGGCGTTGTCGGCAGCACGCTCTGGCGTGTCCTCAACCAGACCACGCC AGAAGCCGGGTTGATGGGAGCCTTCGCGGTAGGTGCGCTGATCGTAAACATCCTCGCGGTGCTGCCGCTGCTAAAGCACC GCAAGGGTGATGCCAATATGCGAGCCGTCTGGCTGTTCTCTCGCAACGACGCCATCGGCAACCTCGCCGTGGTCATCGCC GCCGGGCTGGTCGCGTGGCTTGGCAGTGCATGGCCCGACCTGATCGTCGCGTTCGCGATCGCGGGGCTTTTCCTGCATTC GTCGTGGATGATCATCCGCGATGCCCGGAGTGACTTGGTGGAAGCTGACTAA
Upstream 100 bases:
>100_bases GTGCCGAAAGATCGTCTTGAATGTTTTGCGCTGTCATATCATTATCCACTGATACGTTAGCAGCGTACCTTTTCGCCCGC CACCACAAAAAGGATCGCAC
Downstream 100 bases:
>100_bases CTCCATCATGGTGCGACGCGCCGAACGAAAGCCGACATTCGCGCGCCCCGCAGCATCGGTGAGTCTGGGCTCAGAGTCCG CATTCGCCGCGTGCGGCCCC
Product: cation efflux protein
Products: NA
Alternate protein names: Co/Zn/Cd Efflux System Component; Cation Efflux Family Protein; Cation Efflux System Protein; Integral Membrane Protein; Co/Zn/Cd Efflux System Membrane Component; Cation Efflux Permease; Cation Efflux System Permease; Cation Diffusion Facilitator Family Transporter; Cation Diffusion Facilitator; Heavy Metal Detoxification Protein; Transmembrane Protein; Cobalt-Zinc-Cadmium Resistance Protein; Cation Efflux Protein ; CDF Family Heavy Metal/H(+) Antiporter; Co/Zn/Cd Efflux Protein; RND OM Export Protein; RND Efflux System Protein; Co/Zn/Cd Efflux System Protein; Zinc Transporter; CDF Family Cobalt/Cadmium/Zinc Transporter
Number of amino acids: Translated: 283; Mature: 282
Protein sequence:
>283_residues MSQPDNSKLATASSPIRMRVQGMDCAKDAAEIERAARSAGVAEGDVKVSAATHIMTLRIADGDLPKVRPALDATGYGFEK IEDGDTSSDPAYKDPSYRRALWIVVALNLGYGVVEMFGGFLSGSQALKADALDFLGDGAITFLGLLAIGWSLTWRARSAM IQGVFLGLLGLGVVGSTLWRVLNQTTPEAGLMGAFAVGALIVNILAVLPLLKHRKGDANMRAVWLFSRNDAIGNLAVVIA AGLVAWLGSAWPDLIVAFAIAGLFLHSSWMIIRDARSDLVEAD
Sequences:
>Translated_283_residues MSQPDNSKLATASSPIRMRVQGMDCAKDAAEIERAARSAGVAEGDVKVSAATHIMTLRIADGDLPKVRPALDATGYGFEK IEDGDTSSDPAYKDPSYRRALWIVVALNLGYGVVEMFGGFLSGSQALKADALDFLGDGAITFLGLLAIGWSLTWRARSAM IQGVFLGLLGLGVVGSTLWRVLNQTTPEAGLMGAFAVGALIVNILAVLPLLKHRKGDANMRAVWLFSRNDAIGNLAVVIA AGLVAWLGSAWPDLIVAFAIAGLFLHSSWMIIRDARSDLVEAD >Mature_282_residues SQPDNSKLATASSPIRMRVQGMDCAKDAAEIERAARSAGVAEGDVKVSAATHIMTLRIADGDLPKVRPALDATGYGFEKI EDGDTSSDPAYKDPSYRRALWIVVALNLGYGVVEMFGGFLSGSQALKADALDFLGDGAITFLGLLAIGWSLTWRARSAMI QGVFLGLLGLGVVGSTLWRVLNQTTPEAGLMGAFAVGALIVNILAVLPLLKHRKGDANMRAVWLFSRNDAIGNLAVVIAA GLVAWLGSAWPDLIVAFAIAGLFLHSSWMIIRDARSDLVEAD
Specific function: Involved In Zinc Efflux Across The Cytoplasmic Membrane, Thus Reducing Zinc Accumulation In The Cytoplasm And Rendering Bacteria More Resistant To Zinc. It May Contribute To Zinc Homeostasis At Low Concentrations Of Zinc, Whereas Znta Is Required For Grow
COG id: COG1230
COG function: function code P; Co/Zn/Cd efflux system component
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29999; Mature: 29868
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: PS50846 HMA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPDNSKLATASSPIRMRVQGMDCAKDAAEIERAARSAGVAEGDVKVSAATHIMTLRIA CCCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEC DGDLPKVRPALDATGYGFEKIEDGDTSSDPAYKDPSYRRALWIVVALNLGYGVVEMFGGF CCCCCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHEEEEEEHHCCHHHHHHHHHH LSGSQALKADALDFLGDGAITFLGLLAIGWSLTWRARSAMIQGVFLGLLGLGVVGSTLWR HCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLNQTTPEAGLMGAFAVGALIVNILAVLPLLKHRKGDANMRAVWLFSRNDAIGNLAVVIA HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHH AGLVAWLGSAWPDLIVAFAIAGLFLHSSWMIIRDARSDLVEAD HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHEEECCHHHHCCCC >Mature Secondary Structure SQPDNSKLATASSPIRMRVQGMDCAKDAAEIERAARSAGVAEGDVKVSAATHIMTLRIA CCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEEEEC DGDLPKVRPALDATGYGFEKIEDGDTSSDPAYKDPSYRRALWIVVALNLGYGVVEMFGGF CCCCCCCCHHHCCCCCCCHHCCCCCCCCCCCCCCCCHHHHEEEEEEHHCCHHHHHHHHHH LSGSQALKADALDFLGDGAITFLGLLAIGWSLTWRARSAMIQGVFLGLLGLGVVGSTLWR HCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLNQTTPEAGLMGAFAVGALIVNILAVLPLLKHRKGDANMRAVWLFSRNDAIGNLAVVIA HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCHHHHHHHHH AGLVAWLGSAWPDLIVAFAIAGLFLHSSWMIIRDARSDLVEAD HHHHHHHHCCHHHHHHHHHHHHHHHHCCHHEEECCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA