| Definition | Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence. |
|---|---|
| Accession | NC_009957 |
| Length | 126,304 |
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The map label for this gene is 159046505
Identifier: 159046505
GI number: 159046505
Start: 29536
End: 30282
Strand: Direct
Name: 159046505
Synonym: Dshi_3966
Alternate gene names: NA
Gene position: 29536-30282 (Clockwise)
Preceding gene: 159046504
Following gene: 159046507
Centisome position: 23.38
GC content: 54.48
Gene sequence:
>747_bases ATGCGTCATTTACTCAAGAAGCTTCTCCCCTCGGTCGTAGTCACTTTAACCGTGACAGGCCTTTCACTACCGATGTCCGC CCGAGCGCAGACATACCCGATCGATTGCGCAATCCTCTTGTGTCTCTCTGGTGGCTGGCCCGCTTCTGTCCCTTGTGCTC GGGCTCGCGCCGAATTCATCCGGCGGATTACGCCCTGGCCAGTGGAGCCGCCGCTCCAAATTTGGCGCTGTCCAATGGGT GCGTCCTATGAGACCGCTCCAGCACCAAACAGTGTAAACCGCATCTTTGAAGCGTTCTTACAGAACAACCGCACTGAACC GCGACAGTCTTTTCCAGCGCAAGATGTCGCTACCCCGATTGAGGCTGCTTTGCGCACTCCAGATGCCCCTAATGACTTCG TACTCGCCGATAGAGCCCTCCGGCTTGTTCAAGATCGCGCGGACATCGATATCAGCGGTCCTGAGTTCAATTTCGTGCGG TCTATTCGCGTCTTTAATATCCAGTACGCAAGACAATACCAGGCTGGAAGCGAAGGAGATTGCGAACGTAGCGCCAACGT TGTTCTTGGCACATATGGAACGCAAGGTGAGTTCGCTTGGCAAAGAACTTCCATCACCGCCCTCCCCACCGCTCAAATTG GTCTCGAAAGATGGGGGCAAAATTGCCCCGGCATCTATCACCGCTCAGTATTTGTCGACTGGCGTGACTATGAAGGCAAC TACGGTTTTGAGCAGGTGAACTACTAG
Upstream 100 bases:
>100_bases CCAGTTGGTTAACATAAACTTCATTATGCGTCTTTATACTTAGTGTTGCGATAGTATATTTTCGTATGTATGCTGAGGTC TGTCACAGAGGGTCCTCAGC
Downstream 100 bases:
>100_bases CGCCGTCAAAGACAGCGTTGGCATTCATCCGTGCTGACCTAAGTGCTCGGAGTTACTCAATCACCGGTCGTTCGCTACTG TCGATGCCAAGGTCAGCTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MRHLLKKLLPSVVVTLTVTGLSLPMSARAQTYPIDCAILLCLSGGWPASVPCARARAEFIRRITPWPVEPPLQIWRCPMG ASYETAPAPNSVNRIFEAFLQNNRTEPRQSFPAQDVATPIEAALRTPDAPNDFVLADRALRLVQDRADIDISGPEFNFVR SIRVFNIQYARQYQAGSEGDCERSANVVLGTYGTQGEFAWQRTSITALPTAQIGLERWGQNCPGIYHRSVFVDWRDYEGN YGFEQVNY
Sequences:
>Translated_248_residues MRHLLKKLLPSVVVTLTVTGLSLPMSARAQTYPIDCAILLCLSGGWPASVPCARARAEFIRRITPWPVEPPLQIWRCPMG ASYETAPAPNSVNRIFEAFLQNNRTEPRQSFPAQDVATPIEAALRTPDAPNDFVLADRALRLVQDRADIDISGPEFNFVR SIRVFNIQYARQYQAGSEGDCERSANVVLGTYGTQGEFAWQRTSITALPTAQIGLERWGQNCPGIYHRSVFVDWRDYEGN YGFEQVNY >Mature_248_residues MRHLLKKLLPSVVVTLTVTGLSLPMSARAQTYPIDCAILLCLSGGWPASVPCARARAEFIRRITPWPVEPPLQIWRCPMG ASYETAPAPNSVNRIFEAFLQNNRTEPRQSFPAQDVATPIEAALRTPDAPNDFVLADRALRLVQDRADIDISGPEFNFVR SIRVFNIQYARQYQAGSEGDCERSANVVLGTYGTQGEFAWQRTSITALPTAQIGLERWGQNCPGIYHRSVFVDWRDYEGN YGFEQVNY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27825; Mature: 27825
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRHLLKKLLPSVVVTLTVTGLSLPMSARAQTYPIDCAILLCLSGGWPASVPCARARAEFI CHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH RRITPWPVEPPLQIWRCPMGASYETAPAPNSVNRIFEAFLQNNRTEPRQSFPAQDVATPI HHCCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH EAALRTPDAPNDFVLADRALRLVQDRADIDISGPEFNFVRSIRVFNIQYARQYQAGSEGD HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEEEEEEHHHHHHCCCCCCC CERSANVVLGTYGTQGEFAWQRTSITALPTAQIGLERWGQNCPGIYHRSVFVDWRDYEGN CCCCCCEEEECCCCCCCEEEEECEEEECCHHHHHHHHHCCCCCCEEEEEEEEEEECCCCC YGFEQVNY CCCCCCCC >Mature Secondary Structure MRHLLKKLLPSVVVTLTVTGLSLPMSARAQTYPIDCAILLCLSGGWPASVPCARARAEFI CHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHH RRITPWPVEPPLQIWRCPMGASYETAPAPNSVNRIFEAFLQNNRTEPRQSFPAQDVATPI HHCCCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHH EAALRTPDAPNDFVLADRALRLVQDRADIDISGPEFNFVRSIRVFNIQYARQYQAGSEGD HHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHEEEEEEEEEHHHHHHCCCCCCC CERSANVVLGTYGTQGEFAWQRTSITALPTAQIGLERWGQNCPGIYHRSVFVDWRDYEGN CCCCCCEEEECCCCCCCEEEEECEEEECCHHHHHHHHHCCCCCCEEEEEEEEEEECCCCC YGFEQVNY CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA