Definition Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence.
Accession NC_009957
Length 126,304

Click here to switch to the map view.

The map label for this gene is 159046504

Identifier: 159046504

GI number: 159046504

Start: 28872

End: 29183

Strand: Direct

Name: 159046504

Synonym: Dshi_3965

Alternate gene names: NA

Gene position: 28872-29183 (Clockwise)

Preceding gene: 159046503

Following gene: 159046505

Centisome position: 22.86

GC content: 59.29

Gene sequence:

>312_bases
ATGTTCACCGAGACACTGACAGCTCATGACGACACGATTGGCCTCGCCTGCGAGGGCAAGCTCAGCGAAAGCGACCTGAA
ACGGATGCACGCCCTGCTTCATGAGCGCCTGCAAGAGACAAGTAAGCCCGGCCTGGTTCTCGATCTCACGAGGTTCGAAG
GCTACGATGGGCCGTCCGCTCTGCTCGAAGTTCTGAAAATCGACACAGCCCATAGGAATGACTTCCGCCGCGTCGCTGTG
GTGGGCGAAGGGGCTTTGTTGGAGTGGGGAACCAGGTTCGCCGACGTGCTGACCACGGCAGAACTCCGTTAG

Upstream 100 bases:

>100_bases
AGCATCGGTCATTCGAGTCTGGAATTTGAGCACGAAGACCGCGCACACGAAAACGCTGACCTTTACGGTCACGGCAAACC
GGAAAAAGAGGAGGAAAACC

Downstream 100 bases:

>100_bases
TTCGACCCGGCGGAAATGAAGGCGGCAATCGCCTGGGCAAGTGAAAGGTAGAGTAGCTTTCAATCAGATGCCTTCGCAGA
AGACAGCATCTGTTCGAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MFTETLTAHDDTIGLACEGKLSESDLKRMHALLHERLQETSKPGLVLDLTRFEGYDGPSALLEVLKIDTAHRNDFRRVAV
VGEGALLEWGTRFADVLTTAELR

Sequences:

>Translated_103_residues
MFTETLTAHDDTIGLACEGKLSESDLKRMHALLHERLQETSKPGLVLDLTRFEGYDGPSALLEVLKIDTAHRNDFRRVAV
VGEGALLEWGTRFADVLTTAELR
>Mature_103_residues
MFTETLTAHDDTIGLACEGKLSESDLKRMHALLHERLQETSKPGLVLDLTRFEGYDGPSALLEVLKIDTAHRNDFRRVAV
VGEGALLEWGTRFADVLTTAELR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11481; Mature: 11481

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTETLTAHDDTIGLACEGKLSESDLKRMHALLHERLQETSKPGLVLDLTRFEGYDGPSA
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
LLEVLKIDTAHRNDFRRVAVVGEGALLEWGTRFADVLTTAELR
HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFTETLTAHDDTIGLACEGKLSESDLKRMHALLHERLQETSKPGLVLDLTRFEGYDGPSA
CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHH
LLEVLKIDTAHRNDFRRVAVVGEGALLEWGTRFADVLTTAELR
HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA