| Definition | Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence. |
|---|---|
| Accession | NC_009957 |
| Length | 126,304 |
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The map label for this gene is cadA [H]
Identifier: 159046486
GI number: 159046486
Start: 15242
End: 17428
Strand: Direct
Name: cadA [H]
Synonym: Dshi_3947
Alternate gene names: 159046486
Gene position: 15242-17428 (Clockwise)
Preceding gene: 159046484
Following gene: 159046488
Centisome position: 12.07
GC content: 65.16
Gene sequence:
>2187_bases GTGGCGATCCTGAACCGGGTTGTCGGGCCGAAAGTGGGCGGAACCGAACACCTGGCATTCGACGTGATCAACGGGCGAAT GACCATCCTCGATAGCGCCGAGAGGATACCAGACGACGAAGTCACGCAGTTGGTCGCAACGACCGGCATGAGCGCCAAGC CATGGGATGCCGACAACGCAGCAGAGGACCAGGCGGCGCATCTGGCACGTCAGAAGCGCTTTACCTCGTTGAGCGGCGGC TTCTGGGCGGCGGGATTCCTTTTTCACATTGTCGAGACCGGCATGGGCGGCGCGCTCGGGCTCTTTGCGGGCCATGGCGA GGTGCCTATGCCTATGGTGGAAGCAGGGATCTTCGCCGTCGCGATTCTTTTTGGCGTCTGGCTTGTCGCGCCCAAGGCCT GGTCTTCGGCGCGGAGGCTTAGCCCCGACATGAACCTGCTCATGGTGGTGGCCGTCGCGGGCGCCATCGGCCTCGGCGAG TTTTTTGAGGCCGCGACGGTCGCCTTCTTCTTCTCGCTTTCGCTTTATCTTGAGAGCTGGAGCGTGGGGCGGGCGCGTAA TGCGGTTTCCGCGCTCCTCGATCTGGCGCCGCCAACGGCGCGGGTTCTTTACGACGACGGATCTGAATCCGACGTTCCGG CCGCGGCCGTGGCAGTCAATGCAAGGTTTATCGTGCGCGGCGGCGACCGGATCCCCCTCGACGGTGAGGTCGTGGACGGG GCAGGGGCCGTCGATCAGGCCCCAATTACTGGGGAAAGCGCGCTAGTGCCCAAGGAACCAGGCGACGAGGTCTATGCCGG CACGATCAACGGCGAGGGCACACTGACGGTGCGGGCGACGAAGGCCGCCTCGGACACGGTGCTCGCGAAAATCATTCGCA TGGTGGGCGATGCCCATGCCCGCCGCGCGCCGGTCGAACAGTGGGTGGCCAAGTTCGCGCGCATCTACACACCCATCGTG ATGGCTTTGGCGATCGCCATCGCGCTGGTGCCGCCACTGCTGCTCGGCGGCGCCTGGGACTACTGGTTCTACAATGCTCT GGTCCTTCTGGTCATCGCATGTCCTTGCGCGCTGGTCATTTCTACGCCGGTCTCCATCGTGGCAGCGCTGACCGCGTCGG CACGGGCGGGGGTGCTCATCAAGGGCGGCGCCTATGTCGAGGCGCCGGGGCGGACCACGGCACTGGCGATGGACAAGACC GGGACGATCACCATGGGCGAGCCTGAGGTGGCGGCGGTTCACCCACTGGTCGGCGTTTCCGCACGCGATCTCATGGCGCT GGCAGCAAGCCTGGAGGCGCGGTCTTCACACCCGCTGGCACGCGCCATCCTCTCGCGCGCCGAAGCCGATGGTGTTTCCG TGTCTGCCGCAGAGGACACCCGTACCGTGCCCGGGCGCGGTCTGGAAGGACGCGCCGACGGGCGCGCTATCTGGCTCGGC TCGGATCGCTTCGCCGAAGAGAAGGGGTTCGGCAATGCCATTCCGGCGGATCTGCGGGATCGGATCGAAGGGGCAGGGAG CACCCTCGTTGCCGTGGGTGACGAGACCGGCGTGACCGGCGTACTGGAGCTTCGCGACCGCATCCGCCCAGATGCAAAGG GGATCGTTGCGCGTCTGCATGCGCAGGGTGTGAAGACCATCGTGATGTTGACGGGCGACAACGAACGCACCGCGCGCGCG GTGGCAGCCGAAGTCGGCATCGACGAGGTGCGCGCCGAACTTTTGCCAGAAGACAAGGTGACGGCCATTGAGGAACTCGT CGAAAGCCACGACATGGTGGCGATGATCGGCGACGGTGTGAATGACGCACCGGCCATGGCGCGGGCGCATTATGCCATCG CCATGGGCGCTGTCGGATCGGATGCCGCGATCGAGACGGCCGACATCGCGCTGATGACCGACGACATCGGCAAGGTACCC TGGCTTATCGGCCATTCGCGCCGTGCCATGACGATCATCCACCAGAATATCGGCATATCGCTGGCGACCAAGGCGCTGTT CGTCGGGCTGACCGCGTTCGGTATGGCCTCAATGTGGGGCGCCATTGCTGCGGATGTAGGCGTGTCTCTGCTGGTGGTCG CCAACGCACTTCGGCTCCTGAACGGCCATCAGGTTGAGGCCGGGCCTTCAGGCGGAGAACCGGTGGGCGAGCAGATGGCG AAAGGAGCACTGGCGCACGGTCATTGA
Upstream 100 bases:
>100_bases CAACTCCTGTTGCGACGCCAGCAAGGACGTCGCGTCCACGGCGCCAGCGCCGTCTGGCGGAAGGAGCTTTCAGGTCTCCG GGCTCGATTGCGCCGAAGAG
Downstream 100 bases:
>100_bases TCCGGCGGTTTCGGTAGCTCGATATCGCTTTTGCGGTCCAGCCACGCCAGCGCCCCGACAGAGAATTCCGAACCCCGGTA GGGTTCCGTCCAGGCGGTCT
Product: heavy metal translocating P-type ATPase
Products: NA
Alternate protein names: Cadmium efflux ATPase [H]
Number of amino acids: Translated: 728; Mature: 727
Protein sequence:
>728_residues MAILNRVVGPKVGGTEHLAFDVINGRMTILDSAERIPDDEVTQLVATTGMSAKPWDADNAAEDQAAHLARQKRFTSLSGG FWAAGFLFHIVETGMGGALGLFAGHGEVPMPMVEAGIFAVAILFGVWLVAPKAWSSARRLSPDMNLLMVVAVAGAIGLGE FFEAATVAFFFSLSLYLESWSVGRARNAVSALLDLAPPTARVLYDDGSESDVPAAAVAVNARFIVRGGDRIPLDGEVVDG AGAVDQAPITGESALVPKEPGDEVYAGTINGEGTLTVRATKAASDTVLAKIIRMVGDAHARRAPVEQWVAKFARIYTPIV MALAIAIALVPPLLLGGAWDYWFYNALVLLVIACPCALVISTPVSIVAALTASARAGVLIKGGAYVEAPGRTTALAMDKT GTITMGEPEVAAVHPLVGVSARDLMALAASLEARSSHPLARAILSRAEADGVSVSAAEDTRTVPGRGLEGRADGRAIWLG SDRFAEEKGFGNAIPADLRDRIEGAGSTLVAVGDETGVTGVLELRDRIRPDAKGIVARLHAQGVKTIVMLTGDNERTARA VAAEVGIDEVRAELLPEDKVTAIEELVESHDMVAMIGDGVNDAPAMARAHYAIAMGAVGSDAAIETADIALMTDDIGKVP WLIGHSRRAMTIIHQNIGISLATKALFVGLTAFGMASMWGAIAADVGVSLLVVANALRLLNGHQVEAGPSGGEPVGEQMA KGALAHGH
Sequences:
>Translated_728_residues MAILNRVVGPKVGGTEHLAFDVINGRMTILDSAERIPDDEVTQLVATTGMSAKPWDADNAAEDQAAHLARQKRFTSLSGG FWAAGFLFHIVETGMGGALGLFAGHGEVPMPMVEAGIFAVAILFGVWLVAPKAWSSARRLSPDMNLLMVVAVAGAIGLGE FFEAATVAFFFSLSLYLESWSVGRARNAVSALLDLAPPTARVLYDDGSESDVPAAAVAVNARFIVRGGDRIPLDGEVVDG AGAVDQAPITGESALVPKEPGDEVYAGTINGEGTLTVRATKAASDTVLAKIIRMVGDAHARRAPVEQWVAKFARIYTPIV MALAIAIALVPPLLLGGAWDYWFYNALVLLVIACPCALVISTPVSIVAALTASARAGVLIKGGAYVEAPGRTTALAMDKT GTITMGEPEVAAVHPLVGVSARDLMALAASLEARSSHPLARAILSRAEADGVSVSAAEDTRTVPGRGLEGRADGRAIWLG SDRFAEEKGFGNAIPADLRDRIEGAGSTLVAVGDETGVTGVLELRDRIRPDAKGIVARLHAQGVKTIVMLTGDNERTARA VAAEVGIDEVRAELLPEDKVTAIEELVESHDMVAMIGDGVNDAPAMARAHYAIAMGAVGSDAAIETADIALMTDDIGKVP WLIGHSRRAMTIIHQNIGISLATKALFVGLTAFGMASMWGAIAADVGVSLLVVANALRLLNGHQVEAGPSGGEPVGEQMA KGALAHGH >Mature_727_residues AILNRVVGPKVGGTEHLAFDVINGRMTILDSAERIPDDEVTQLVATTGMSAKPWDADNAAEDQAAHLARQKRFTSLSGGF WAAGFLFHIVETGMGGALGLFAGHGEVPMPMVEAGIFAVAILFGVWLVAPKAWSSARRLSPDMNLLMVVAVAGAIGLGEF FEAATVAFFFSLSLYLESWSVGRARNAVSALLDLAPPTARVLYDDGSESDVPAAAVAVNARFIVRGGDRIPLDGEVVDGA GAVDQAPITGESALVPKEPGDEVYAGTINGEGTLTVRATKAASDTVLAKIIRMVGDAHARRAPVEQWVAKFARIYTPIVM ALAIAIALVPPLLLGGAWDYWFYNALVLLVIACPCALVISTPVSIVAALTASARAGVLIKGGAYVEAPGRTTALAMDKTG TITMGEPEVAAVHPLVGVSARDLMALAASLEARSSHPLARAILSRAEADGVSVSAAEDTRTVPGRGLEGRADGRAIWLGS DRFAEEKGFGNAIPADLRDRIEGAGSTLVAVGDETGVTGVLELRDRIRPDAKGIVARLHAQGVKTIVMLTGDNERTARAV AAEVGIDEVRAELLPEDKVTAIEELVESHDMVAMIGDGVNDAPAMARAHYAIAMGAVGSDAAIETADIALMTDDIGKVPW LIGHSRRAMTIIHQNIGISLATKALFVGLTAFGMASMWGAIAADVGVSLLVVANALRLLNGHQVEAGPSGGEPVGEQMAK GALAHGH
Specific function: This electroneutral antiporter ejects one cadmium ion while accumulating two protons by an energy-dependent efflux mechanism [H]
COG id: COG2217
COG function: function code P; Cation transport ATPase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 HMA domains [H]
Homologues:
Organism=Homo sapiens, GI115529486, Length=647, Percent_Identity=28.7480680061824, Blast_Score=254, Evalue=2e-67, Organism=Homo sapiens, GI55743071, Length=625, Percent_Identity=30.72, Blast_Score=251, Evalue=1e-66, Organism=Homo sapiens, GI55743073, Length=494, Percent_Identity=31.9838056680162, Blast_Score=216, Evalue=7e-56, Organism=Homo sapiens, GI4502271, Length=259, Percent_Identity=25.4826254826255, Blast_Score=70, Evalue=8e-12, Organism=Homo sapiens, GI83700225, Length=247, Percent_Identity=23.8866396761134, Blast_Score=68, Evalue=3e-11, Organism=Homo sapiens, GI22748667, Length=259, Percent_Identity=24.3243243243243, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI48762687, Length=226, Percent_Identity=30.0884955752212, Blast_Score=67, Evalue=5e-11, Organism=Homo sapiens, GI48762691, Length=226, Percent_Identity=30.0884955752212, Blast_Score=67, Evalue=7e-11, Organism=Homo sapiens, GI48762685, Length=226, Percent_Identity=30.0884955752212, Blast_Score=67, Evalue=7e-11, Organism=Homo sapiens, GI48762689, Length=226, Percent_Identity=30.0884955752212, Blast_Score=67, Evalue=7e-11, Organism=Escherichia coli, GI1789879, Length=588, Percent_Identity=40.9863945578231, Blast_Score=373, Evalue=1e-104, Organism=Escherichia coli, GI1786691, Length=556, Percent_Identity=38.4892086330935, Blast_Score=276, Evalue=2e-75, Organism=Escherichia coli, GI1786914, Length=445, Percent_Identity=34.8314606741573, Blast_Score=154, Evalue=3e-38, Organism=Caenorhabditis elegans, GI17556548, Length=598, Percent_Identity=31.2709030100334, Blast_Score=213, Evalue=2e-55, Organism=Caenorhabditis elegans, GI17559224, Length=267, Percent_Identity=25.0936329588015, Blast_Score=68, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6320475, Length=492, Percent_Identity=30.0813008130081, Blast_Score=212, Evalue=2e-55, Organism=Saccharomyces cerevisiae, GI6319772, Length=606, Percent_Identity=27.8877887788779, Blast_Score=184, Evalue=3e-47, Organism=Saccharomyces cerevisiae, GI6321430, Length=558, Percent_Identity=25.6272401433692, Blast_Score=92, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6325221, Length=552, Percent_Identity=25.3623188405797, Blast_Score=88, Evalue=4e-18, Organism=Saccharomyces cerevisiae, GI6321271, Length=245, Percent_Identity=28.9795918367347, Blast_Score=82, Evalue=4e-16, Organism=Saccharomyces cerevisiae, GI6321432, Length=232, Percent_Identity=29.7413793103448, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI221329854, Length=348, Percent_Identity=31.3218390804598, Blast_Score=137, Evalue=3e-32, Organism=Drosophila melanogaster, GI24668708, Length=148, Percent_Identity=30.4054054054054, Blast_Score=67, Evalue=5e-11, Organism=Drosophila melanogaster, GI281366617, Length=148, Percent_Identity=30.4054054054054, Blast_Score=67, Evalue=6e-11, Organism=Drosophila melanogaster, GI161085803, Length=148, Percent_Identity=30.4054054054054, Blast_Score=67, Evalue=6e-11, Organism=Drosophila melanogaster, GI24668696, Length=148, Percent_Identity=30.4054054054054, Blast_Score=67, Evalue=6e-11, Organism=Drosophila melanogaster, GI24668704, Length=148, Percent_Identity=30.4054054054054, Blast_Score=67, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008250 - InterPro: IPR001366 - InterPro: IPR006404 - InterPro: IPR006416 - InterPro: IPR001757 - InterPro: IPR018303 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR017969 - InterPro: IPR006121 [H]
Pfam domain/function: PF00122 E1-E2_ATPase; PF00403 HMA; PF00702 Hydrolase [H]
EC number: =3.6.3.3 [H]
Molecular weight: Translated: 75661; Mature: 75530
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: PS00154 ATPASE_E1_E2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAILNRVVGPKVGGTEHLAFDVINGRMTILDSAERIPDDEVTQLVATTGMSAKPWDADNA CCHHHHHCCCCCCCCCEEEEEEECCEEEEECCHHHCCCHHHHHHHHHCCCCCCCCCCCCC AEDQAAHLARQKRFTSLSGGFWAAGFLFHIVETGMGGALGLFAGHGEVPMPMVEAGIFAV CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH AILFGVWLVAPKAWSSARRLSPDMNLLMVVAVAGAIGLGEFFEAATVAFFFSLSLYLESW HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SVGRARNAVSALLDLAPPTARVLYDDGSESDVPAAAVAVNARFIVRGGDRIPLDGEVVDG CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEECC AGAVDQAPITGESALVPKEPGDEVYAGTINGEGTLTVRATKAASDTVLAKIIRMVGDAHA CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHCCHHH RRAPVEQWVAKFARIYTPIVMALAIAIALVPPLLLGGAWDYWFYNALVLLVIACPCALVI HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH STPVSIVAALTASARAGVLIKGGAYVEAPGRTTALAMDKTGTITMGEPEVAAVHPLVGVS HHHHHHHHHHHHCCCCCEEEECCEEEECCCCEEEEEECCCCEEEECCCCCEEECCHHCCC ARDLMALAASLEARSSHPLARAILSRAEADGVSVSAAEDTRTVPGRGLEGRADGRAIWLG HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEC SDRFAEEKGFGNAIPADLRDRIEGAGSTLVAVGDETGVTGVLELRDRIRPDAKGIVARLH CCHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHH AQGVKTIVMLTGDNERTARAVAAEVGIDEVRAELLPEDKVTAIEELVESHDMVAMIGDGV HCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCC NDAPAMARAHYAIAMGAVGSDAAIETADIALMTDDIGKVPWLIGHSRRAMTIIHQNIGIS CCCHHHHHHHHHEEECCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCEEEEEECCCCHH LATKALFVGLTAFGMASMWGAIAADVGVSLLVVANALRLLNGHQVEAGPSGGEPVGEQMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHH KGALAHGH CCCCCCCC >Mature Secondary Structure AILNRVVGPKVGGTEHLAFDVINGRMTILDSAERIPDDEVTQLVATTGMSAKPWDADNA CHHHHHCCCCCCCCCEEEEEEECCEEEEECCHHHCCCHHHHHHHHHCCCCCCCCCCCCC AEDQAAHLARQKRFTSLSGGFWAAGFLFHIVETGMGGALGLFAGHGEVPMPMVEAGIFAV CHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH AILFGVWLVAPKAWSSARRLSPDMNLLMVVAVAGAIGLGEFFEAATVAFFFSLSLYLESW HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SVGRARNAVSALLDLAPPTARVLYDDGSESDVPAAAVAVNARFIVRGGDRIPLDGEVVDG CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEEEEEEEECCCCCCCCCEEECC AGAVDQAPITGESALVPKEPGDEVYAGTINGEGTLTVRATKAASDTVLAKIIRMVGDAHA CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHCCHHH RRAPVEQWVAKFARIYTPIVMALAIAIALVPPLLLGGAWDYWFYNALVLLVIACPCALVI HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH STPVSIVAALTASARAGVLIKGGAYVEAPGRTTALAMDKTGTITMGEPEVAAVHPLVGVS HHHHHHHHHHHHCCCCCEEEECCEEEECCCCEEEEEECCCCEEEECCCCCEEECCHHCCC ARDLMALAASLEARSSHPLARAILSRAEADGVSVSAAEDTRTVPGRGLEGRADGRAIWLG HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEEC SDRFAEEKGFGNAIPADLRDRIEGAGSTLVAVGDETGVTGVLELRDRIRPDAKGIVARLH CCHHHHHCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHH AQGVKTIVMLTGDNERTARAVAAEVGIDEVRAELLPEDKVTAIEELVESHDMVAMIGDGV HCCCEEEEEEECCCCHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCC NDAPAMARAHYAIAMGAVGSDAAIETADIALMTDDIGKVPWLIGHSRRAMTIIHQNIGIS CCCHHHHHHHHHEEECCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCEEEEEECCCCHH LATKALFVGLTAFGMASMWGAIAADVGVSLLVVANALRLLNGHQVEAGPSGGEPVGEQMA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHH KGALAHGH CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11302791 [H]