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The map label for this gene is ycjO [C]

Identifier: 15889771

GI number: 15889771

Start: 2474379

End: 2475317

Strand: Direct

Name: ycjO [C]

Synonym: Atu2506

Alternate gene names: 15889771

Gene position: 2474379-2475317 (Clockwise)

Preceding gene: 15889770

Following gene: 159185246

Centisome position: 87.08

GC content: 57.08

Gene sequence:

>939_bases
ATGGCCTCCGTGAGCATCGAAAACACCAAAACAGGCGTCAGTCGCGCAGAAGGGAGCAGGCCGCCAAGGCTTGCTCCCAA
CTACTGGCCCTTCGTCATACCGGCACTGGTCGTCATTTCGGCTGTCATCGTTTTTCCATGGGTCTTCACCCTCTGGATGA
GCGTGCATCGCTGGACGCTCGGACAGGAGCAGAGCTTTATCGGTTTTGATAACTACATAAGGCTTGCAAGCGATCTCAGG
TTCTGGGAATCGCTCTGGCACACGCTCATCTATACCGTGCTGTCGGTTGTTGCTCCCCTGTTCCTCGGAACATTGGCGGC
GCTGGTTTTCGATGCGCAATTTCCGCTGCGCGGTTTTCTGCGCGGCGTCTTCGTGATGCCGATGATGGCGACCCCGGTCG
CCATCGCACTCGTCTGGACCATGATGTTCCACCCGCAGCTCGGTGTCCTGAACTATCTGCTGTCCCTGATCGGCATCGGT
CCGCTGGAATGGATCTACAACCAGTCCACCGTCATCCCCTCGCTGGTGCTGGTGGAAACCTGGCAATGGACGCCGCTCGT
CATGCTGATCGTACTCGGCGGTCTCGCCGCCGTACCCCGCGAACCCTATGAAAGTGCTGAAATCGACGGCGCCAACGCCT
GGCAGAAATTCCGTTACCTGACCATGCCGATGATTGCACCGTTCCTGATGATCGCCGTCATCATCCGCTCCATCGATGCC
GTCAAAAGCTTCGACATCATCTATGCGATGACGCAGGGCGGACCCGGCACGGCATCTGAAACCATCAACATCTATCTCTA
TAATACGGCGTTTTCCTATTACGACATCGGTTACGGCTCGGCCATGGCTGTCGTCTTCTTCGTCATCATCGTGGCGCTGT
CCTTCGTGCTTCTGATGGTGCGCCAGCGCTCGCAATGGAACGAGATGGAGGAACACTGA

Upstream 100 bases:

>100_bases
GCGTCGGCCTCACCAACATGATCGGTGGCGCAGATCCAGCAGCTGAGCTGAAAAAGGCGACGGAACAGTTCGCACCCGTT
CTGGCGCGTAGCGAGGGATA

Downstream 100 bases:

>100_bases
TGTCCACAAAGATCCTGAAACGCAAAAATCTCGACCGCATCGGCCTGTTCTTCGTGGCGCTGGTGATGATCTCGCCGGTC
ATCCTGTTCTTCATCTGGAT

Product: ABC transporter, membrane spanning protein (sugar)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 312; Mature: 311

Protein sequence:

>312_residues
MASVSIENTKTGVSRAEGSRPPRLAPNYWPFVIPALVVISAVIVFPWVFTLWMSVHRWTLGQEQSFIGFDNYIRLASDLR
FWESLWHTLIYTVLSVVAPLFLGTLAALVFDAQFPLRGFLRGVFVMPMMATPVAIALVWTMMFHPQLGVLNYLLSLIGIG
PLEWIYNQSTVIPSLVLVETWQWTPLVMLIVLGGLAAVPREPYESAEIDGANAWQKFRYLTMPMIAPFLMIAVIIRSIDA
VKSFDIIYAMTQGGPGTASETINIYLYNTAFSYYDIGYGSAMAVVFFVIIVALSFVLLMVRQRSQWNEMEEH

Sequences:

>Translated_312_residues
MASVSIENTKTGVSRAEGSRPPRLAPNYWPFVIPALVVISAVIVFPWVFTLWMSVHRWTLGQEQSFIGFDNYIRLASDLR
FWESLWHTLIYTVLSVVAPLFLGTLAALVFDAQFPLRGFLRGVFVMPMMATPVAIALVWTMMFHPQLGVLNYLLSLIGIG
PLEWIYNQSTVIPSLVLVETWQWTPLVMLIVLGGLAAVPREPYESAEIDGANAWQKFRYLTMPMIAPFLMIAVIIRSIDA
VKSFDIIYAMTQGGPGTASETINIYLYNTAFSYYDIGYGSAMAVVFFVIIVALSFVLLMVRQRSQWNEMEEH
>Mature_311_residues
ASVSIENTKTGVSRAEGSRPPRLAPNYWPFVIPALVVISAVIVFPWVFTLWMSVHRWTLGQEQSFIGFDNYIRLASDLRF
WESLWHTLIYTVLSVVAPLFLGTLAALVFDAQFPLRGFLRGVFVMPMMATPVAIALVWTMMFHPQLGVLNYLLSLIGIGP
LEWIYNQSTVIPSLVLVETWQWTPLVMLIVLGGLAAVPREPYESAEIDGANAWQKFRYLTMPMIAPFLMIAVIIRSIDAV
KSFDIIYAMTQGGPGTASETINIYLYNTAFSYYDIGYGSAMAVVFFVIIVALSFVLLMVRQRSQWNEMEEH

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=249, Percent_Identity=36.144578313253, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1789861, Length=289, Percent_Identity=26.643598615917, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1790465, Length=251, Percent_Identity=28.2868525896414, Blast_Score=78, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35195; Mature: 35064

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCC
>Mature Secondary Structure 
ASVSIENTKTGVSRAEGSRPPRLAPNYWPFVIPALVVISAVIVFPWVFTLWMSVHRWTL
CCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GQEQSFIGFDNYIRLASDLRFWESLWHTLIYTVLSVVAPLFLGTLAALVFDAQFPLRGFL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
RGVFVMPMMATPVAIALVWTMMFHPQLGVLNYLLSLIGIGPLEWIYNQSTVIPSLVLVET
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHC
WQWTPLVMLIVLGGLAAVPREPYESAEIDGANAWQKFRYLTMPMIAPFLMIAVIIRSIDA
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VKSFDIIYAMTQGGPGTASETINIYLYNTAFSYYDIGYGSAMAVVFFVIIVALSFVLLMV
HHHHHHEEEEECCCCCCCCCEEEEEEEECEEHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
RQRSQWNEMEEH
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]