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The map label for this gene is ycjN [C]

Identifier: 15889770

GI number: 15889770

Start: 2473048

End: 2474379

Strand: Direct

Name: ycjN [C]

Synonym: Atu2505

Alternate gene names: 15889770

Gene position: 2473048-2474379 (Clockwise)

Preceding gene: 159185245

Following gene: 15889771

Centisome position: 87.03

GC content: 60.36

Gene sequence:

>1332_bases
ATGACGCATTCATTGCTCAACCCCACACGCCGCGCCTTTCTGGCAGGCACGGCCGCGATTGGCGGCAGCGCGATGCTCGG
CATTCGCCCGGCATCGGCAGCGGTGAACTGGAAAAAACACGCCGGCACCACACTTGAAGTCAACCTGGTCAAAAGCCCGC
GCAGCGAAACGCTGATCAAATATCTCGGCGAGTTCGAAGAACTGACCGGCATCAAGGTCAATGCCGAAGCAACCCCGGAA
CAGCAGCAGCGCCAGAAGGTGGTAATCGAGCTTTCCTCCGGCAAACCGAGCTTCGACGTCGTGCATCTGAGCTACCACGT
ACAGAAGCGCCAGTTCGAAAAGGGCAAGTGGCTGGCCGATATCAGCGGCTTCCTGAAGGATCCGTCGCTGACCGATCCGT
CGCTGGTTGAAAAGGACTTTGCCGAGGCCGGCATGTTGTTCGCCAAGGATAGCGACGGCGTGCTGCGCTCGCTGCCCTTC
TCGGTGGATTACTGGATTGTCTACTGGAACAAGGAACTCTTCGAAGCCAAGGGCCTGAAATATCCTGAAACCTTCGAGGA
ACTGGTGACGGCGGCGGAAAAGATTACCGATCCCGCAACCAACACTTACGGTTTCGTCGCGCGCGGCCTGAAGAACGCCA
ATACGCCTGTCTGGACCTCGCTGATGCTGGGTTACGGCGCAAAGCCGATCAGCGCGGATGGAAAGATCGACACCGAATCC
AAGGAAGCGGTCGAGGCAGCCAAGCTCTATCAGCGCCTGATGACGAAAGCCGCCCCTCCCGGCGTCTCCGGCTTCAACTG
GGCGGAAGCGCAATCGGCCTTCCTGCAGGGCAAGATCGGCATGTGGTTCGATGGCGTCGGTTTTGCCCCGCCGATCGAGA
ACCCGGAAAAATCCCGCGTCGTCGGCAAGGTCGGTTACGGCGTCATGCCGAAAGGCCCGGCAGTTCAGGCCGCTGGCACG
TTTGGCGATGGTCTCGGTGTGGTCGAAGCCAGCAGCAAAAAGGAAGCCGCTTACCTCTTCTGCCAGTGGGCGATCTCGCA
CGATATGGGTGCGCGTCTGCTGCAGGCAGGTGCCGGCGTTCCGTTCCGCCAGTCCATCCTCGAAGACCAGAAGGTCCGTG
AAGGCGTGAAGATGCCGGCCGCCTGGCTGGATGCGGTCGTCGGTTCCGGCAAGGTCTCGCAGCTTGCGCTTCCCGTCATC
ATTCCGGTGACGGAATTCCGCGACATCTACGGCGTCGGCCTCACCAACATGATCGGTGGCGCAGATCCAGCAGCTGAGCT
GAAAAAGGCGACGGAACAGTTCGCACCCGTTCTGGCGCGTAGCGAGGGATAA

Upstream 100 bases:

>100_bases
CAACTCCGGCAGGGACTAAAGAGGGTCTGCGCTGGACTTGCAGGAAATAAGCAACAAGCCGGGGTGAGGAGAATTTCCGG
CTAACTGGAGGAGAACAGAC

Downstream 100 bases:

>100_bases
TGGCCTCCGTGAGCATCGAAAACACCAAAACAGGCGTCAGTCGCGCAGAAGGGAGCAGGCCGCCAAGGCTTGCTCCCAAC
TACTGGCCCTTCGTCATACC

Product: ABC transporter, substrate binding protein (sugar)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MTHSLLNPTRRAFLAGTAAIGGSAMLGIRPASAAVNWKKHAGTTLEVNLVKSPRSETLIKYLGEFEELTGIKVNAEATPE
QQQRQKVVIELSSGKPSFDVVHLSYHVQKRQFEKGKWLADISGFLKDPSLTDPSLVEKDFAEAGMLFAKDSDGVLRSLPF
SVDYWIVYWNKELFEAKGLKYPETFEELVTAAEKITDPATNTYGFVARGLKNANTPVWTSLMLGYGAKPISADGKIDTES
KEAVEAAKLYQRLMTKAAPPGVSGFNWAEAQSAFLQGKIGMWFDGVGFAPPIENPEKSRVVGKVGYGVMPKGPAVQAAGT
FGDGLGVVEASSKKEAAYLFCQWAISHDMGARLLQAGAGVPFRQSILEDQKVREGVKMPAAWLDAVVGSGKVSQLALPVI
IPVTEFRDIYGVGLTNMIGGADPAAELKKATEQFAPVLARSEG

Sequences:

>Translated_443_residues
MTHSLLNPTRRAFLAGTAAIGGSAMLGIRPASAAVNWKKHAGTTLEVNLVKSPRSETLIKYLGEFEELTGIKVNAEATPE
QQQRQKVVIELSSGKPSFDVVHLSYHVQKRQFEKGKWLADISGFLKDPSLTDPSLVEKDFAEAGMLFAKDSDGVLRSLPF
SVDYWIVYWNKELFEAKGLKYPETFEELVTAAEKITDPATNTYGFVARGLKNANTPVWTSLMLGYGAKPISADGKIDTES
KEAVEAAKLYQRLMTKAAPPGVSGFNWAEAQSAFLQGKIGMWFDGVGFAPPIENPEKSRVVGKVGYGVMPKGPAVQAAGT
FGDGLGVVEASSKKEAAYLFCQWAISHDMGARLLQAGAGVPFRQSILEDQKVREGVKMPAAWLDAVVGSGKVSQLALPVI
IPVTEFRDIYGVGLTNMIGGADPAAELKKATEQFAPVLARSEG
>Mature_442_residues
THSLLNPTRRAFLAGTAAIGGSAMLGIRPASAAVNWKKHAGTTLEVNLVKSPRSETLIKYLGEFEELTGIKVNAEATPEQ
QQRQKVVIELSSGKPSFDVVHLSYHVQKRQFEKGKWLADISGFLKDPSLTDPSLVEKDFAEAGMLFAKDSDGVLRSLPFS
VDYWIVYWNKELFEAKGLKYPETFEELVTAAEKITDPATNTYGFVARGLKNANTPVWTSLMLGYGAKPISADGKIDTESK
EAVEAAKLYQRLMTKAAPPGVSGFNWAEAQSAFLQGKIGMWFDGVGFAPPIENPEKSRVVGKVGYGVMPKGPAVQAAGTF
GDGLGVVEASSKKEAAYLFCQWAISHDMGARLLQAGAGVPFRQSILEDQKVREGVKMPAAWLDAVVGSGKVSQLALPVII
PVTEFRDIYGVGLTNMIGGADPAAELKKATEQFAPVLARSEG

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47759; Mature: 47628

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHSLLNPTRRAFLAGTAAIGGSAMLGIRPASAAVNWKKHAGTTLEVNLVKSPRSETLIK
CCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCCHHHHCCCEEEEEEECCCCHHHHHH
YLGEFEELTGIKVNAEATPEQQQRQKVVIELSSGKPSFDVVHLSYHVQKRQFEKGKWLAD
HHHHHHHHCCEEEECCCCCHHHCCCEEEEEECCCCCCEEEEEEEEHHHHHHHHCCCCHHH
ISGFLKDPSLTDPSLVEKDFAEAGMLFAKDSDGVLRSLPFSVDYWIVYWNKELFEAKGLK
HHHHHCCCCCCCHHHHHHHHHHHCEEEEECCCCHHHHCCCCEEEEEEEECHHHHHHCCCC
YPETFEELVTAAEKITDPATNTYGFVARGLKNANTPVWTSLMLGYGAKPISADGKIDTES
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCH
KEAVEAAKLYQRLMTKAAPPGVSGFNWAEAQSAFLQGKIGMWFDGVGFAPPIENPEKSRV
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHCE
VGKVGYGVMPKGPAVQAAGTFGDGLGVVEASSKKEAAYLFCQWAISHDMGARLLQAGAGV
EECCCCCCCCCCCCEEECCCCCCCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHHCCCC
PFRQSILEDQKVREGVKMPAAWLDAVVGSGKVSQLALPVIIPVTEFRDIYGVGLTNMIGG
CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHEECEEEEEHHHHHHHHCCCHHHHCCC
ADPAAELKKATEQFAPVLARSEG
CCHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
THSLLNPTRRAFLAGTAAIGGSAMLGIRPASAAVNWKKHAGTTLEVNLVKSPRSETLIK
CCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHCCHHHHCCCEEEEEEECCCCHHHHHH
YLGEFEELTGIKVNAEATPEQQQRQKVVIELSSGKPSFDVVHLSYHVQKRQFEKGKWLAD
HHHHHHHHCCEEEECCCCCHHHCCCEEEEEECCCCCCEEEEEEEEHHHHHHHHCCCCHHH
ISGFLKDPSLTDPSLVEKDFAEAGMLFAKDSDGVLRSLPFSVDYWIVYWNKELFEAKGLK
HHHHHCCCCCCCHHHHHHHHHHHCEEEEECCCCHHHHCCCCEEEEEEEECHHHHHHCCCC
YPETFEELVTAAEKITDPATNTYGFVARGLKNANTPVWTSLMLGYGAKPISADGKIDTES
CHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCH
KEAVEAAKLYQRLMTKAAPPGVSGFNWAEAQSAFLQGKIGMWFDGVGFAPPIENPEKSRV
HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHCE
VGKVGYGVMPKGPAVQAAGTFGDGLGVVEASSKKEAAYLFCQWAISHDMGARLLQAGAGV
EECCCCCCCCCCCCEEECCCCCCCCCEEECCCCCCEEEEEEEEHHHHHHHHHHHHHCCCC
PFRQSILEDQKVREGVKMPAAWLDAVVGSGKVSQLALPVIIPVTEFRDIYGVGLTNMIGG
CHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHEECEEEEEHHHHHHHHCCCHHHHCCC
ADPAAELKKATEQFAPVLARSEG
CCHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]