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The map label for this gene is ycdI [C]

Identifier: 15889762

GI number: 15889762

Start: 2466409

End: 2466999

Strand: Reverse

Name: ycdI [C]

Synonym: Atu2496

Alternate gene names: 15889762

Gene position: 2466999-2466409 (Counterclockwise)

Preceding gene: 159185242

Following gene: 15889761

Centisome position: 86.82

GC content: 59.22

Gene sequence:

>591_bases
ATGACGAAATCACTTGATGACGCTGCACTGGCGACGCTTTTCACCGAAGCACGCACCCACAATGGTTGGACGGACAAGCC
GATCGGCGACGAGACGCTGATGGCCCTTTACGATCTGACGAAGATGGGGCCGACCTCAGCCAATTGCTCGCCAGCGCGTT
TCGTCTTCGTGCGCAGCCAGGAGGCGAAGGAAAAGCTGAAGCCTGCGCTGTCTTCCGGCAATCTCGAAAAGACCATGGCG
GCACCGGTGACTGTCATCGCCGCCATTGACAGCGAATTCTACGAGAAACTGCCGGAACTGTTTCCCCACGCCGATGCGCG
TTCGTGGTTCACTTCCAGCCCGGCGGTGGCCGAAGAAACGGCCTTTCGCAACGCCACGCTTCAGGCCGGATATCTGATCC
TTGCCGCCCGCGCGCTAGGGCTGGATACCGGCGCCATGTCGGGTTTCGACAAGGGTAAGGTGGATGCGGCGTTTTTTGCC
GGGACGACGTGGAAATCCAATTTTCTGATCAATCTCGGTTATGGCGATCCGTCGAAGCTGTTCGGCCGCCTGCCGCGCCT
TGGATTTGAAGACGCCTGTGTGCTGGCTTGA

Upstream 100 bases:

>100_bases
CCCACGCGGTCAATATCACCGAGCCTGACCTTTTCAACACCCGGCTGTTGCAGTTCCTGCTGCCAGCCGACCAGACATGA
TGACAGGATTTTAGAGCAAG

Downstream 100 bases:

>100_bases
TGTGTGCTGGCTTGATGGCCTGTTAAGGAAGGATGGGTTAGATGCAGATGATGTCTCTCGAAAAGGAAGCGGCAATGGAG
ACGAAGACTGCTGAGCAGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MTKSLDDAALATLFTEARTHNGWTDKPIGDETLMALYDLTKMGPTSANCSPARFVFVRSQEAKEKLKPALSSGNLEKTMA
APVTVIAAIDSEFYEKLPELFPHADARSWFTSSPAVAEETAFRNATLQAGYLILAARALGLDTGAMSGFDKGKVDAAFFA
GTTWKSNFLINLGYGDPSKLFGRLPRLGFEDACVLA

Sequences:

>Translated_196_residues
MTKSLDDAALATLFTEARTHNGWTDKPIGDETLMALYDLTKMGPTSANCSPARFVFVRSQEAKEKLKPALSSGNLEKTMA
APVTVIAAIDSEFYEKLPELFPHADARSWFTSSPAVAEETAFRNATLQAGYLILAARALGLDTGAMSGFDKGKVDAAFFA
GTTWKSNFLINLGYGDPSKLFGRLPRLGFEDACVLA
>Mature_195_residues
TKSLDDAALATLFTEARTHNGWTDKPIGDETLMALYDLTKMGPTSANCSPARFVFVRSQEAKEKLKPALSSGNLEKTMAA
PVTVIAAIDSEFYEKLPELFPHADARSWFTSSPAVAEETAFRNATLQAGYLILAARALGLDTGAMSGFDKGKVDAAFFAG
TTWKSNFLINLGYGDPSKLFGRLPRLGFEDACVLA

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family. HadB/RutE subfamily

Homologues:

Organism=Escherichia coli, GI1787243, Length=195, Percent_Identity=69.2307692307692, Blast_Score=289, Evalue=8e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2496_AGRT5 (P58792)

Other databases:

- EMBL:   AE007869
- PIR:   AE2883
- PIR:   C97659
- RefSeq:   NP_355443.1
- ProteinModelPortal:   P58792
- SMR:   P58792
- STRING:   P58792
- GeneID:   1134534
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu2496
- eggNOG:   COG0778
- HOGENOM:   HBG322534
- OMA:   MGPTSAN
- PhylomeDB:   P58792
- ProtClustDB:   PRK05365
- BioCyc:   ATUM176299-1:ATU2496-MONOMER
- HAMAP:   MF_01204
- InterPro:   IPR000415

Pfam domain/function: PF00881 Nitroreductase; SSF55469 Nitroreductase

EC number: 1.-.-.- [C]

Molecular weight: Translated: 21139; Mature: 21008

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSLDDAALATLFTEARTHNGWTDKPIGDETLMALYDLTKMGPTSANCSPARFVFVRSQ
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECH
EAKEKLKPALSSGNLEKTMAAPVTVIAAIDSEFYEKLPELFPHADARSWFTSSPAVAEET
HHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHH
AFRNATLQAGYLILAARALGLDTGAMSGFDKGKVDAAFFAGTTWKSNFLINLGYGDPSKL
HHHCCHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEECCCCCCCEEEECCCCCHHHH
FGRLPRLGFEDACVLA
HHHCCCCCCCCCEECC
>Mature Secondary Structure 
TKSLDDAALATLFTEARTHNGWTDKPIGDETLMALYDLTKMGPTSANCSPARFVFVRSQ
CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECH
EAKEKLKPALSSGNLEKTMAAPVTVIAAIDSEFYEKLPELFPHADARSWFTSSPAVAEET
HHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCHHHHH
AFRNATLQAGYLILAARALGLDTGAMSGFDKGKVDAAFFAGTTWKSNFLINLGYGDPSKL
HHHCCHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCEEEEECCCCCCCEEEECCCCCHHHH
FGRLPRLGFEDACVLA
HHHCCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194