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The map label for this gene is acoR [H]

Identifier: 15889501

GI number: 15889501

Start: 2195281

End: 2196240

Strand: Reverse

Name: acoR [H]

Synonym: Atu2225

Alternate gene names: 15889501

Gene position: 2196240-2195281 (Counterclockwise)

Preceding gene: 159185109

Following gene: 159185108

Centisome position: 77.29

GC content: 63.54

Gene sequence:

>960_bases
ATGCCGACAGACATCGCCCATGCGGAACGCGTGTATGAAACAGCACGCCATCGTTCCGCGGCCGCAAGTTCTCCGATTAT
TGCCTCATGGCGGCGCTGCATGGTCAAGCACCGTCTTGCGCCGGAGGAAAACCGCAAGCCGATCTTTCTCAGCGAGATTG
AGTTTCGCCGCGCCCGCGAAAGTGCCGCCGGCCTGATCGCCGAGAGCACGGACGAACTGGACCGCATTTTTCACAGCGTC
GGCAAATCCGGTTGCTGCCTGCTTCTGACCGACGCGCAGGGCGTTGCGCTGGAGCGACGTGGTGCTTCCGGTGATGACCG
CGATTTCCGGGCGCTCGGCCTCTGGAACGGGGCCGTCTGGAGCGAAGAGAGCGTGGGCACCAACGGCATCGGCACGGCGC
TGGTGGATGAGCGCTCGGTAGTGGTCTATCGCGACCAGCATTTCTTCACGTCGAACACTGAACTCTGCTGCACTACCGCG
CCCATCCGCGACCATACCGGCCGGGTGACGGGCGCGCTCGATATTTCCACCTGCCGCGACGATATCAATGAGATGACCTT
CTCCTTCGTCACCCAGGCGGTGAAGGATGCGGCGCAGCGTATCGAAGGCAATCTTTTCCGCCGCGCCTTTCCCGGCGCGC
GCATCGTCGTCGTGCCGACCGGGTTCGGCGCGGCGATGTCACTGCTGGCCGTGGATCAGGACGATCTGGTGCTCGGTGCG
ACGCGGGCCGCCCGCCTCGCATTGAAGCTCGATGATATCAGGATCGCGCAGGGTCTGCCGGCGGCGGATATTCTGCAGGA
ACAGCGCCACGATGGCGGCTCCGACCTTGCGGAAGCGGAACGTTCCGCACTCCGGCGCGTCCTGTCGCGCACCAACGGCA
ATGTCACGCAGGCCGCTTCGCTGCTTGGCATCAGCCGCGCCACGCTTCATCGCAAGATGAAGAAATTCGACGTGCATTAA

Upstream 100 bases:

>100_bases
GCGCAGCCAGCGGGTGCCCCGGCAGGACCGGTCGCGAAGTTTTTTGTTGAAACATGCACGCTTCCAGCGCACCATCGCAT
AAAAGCTTTGGGAGGAGCGT

Downstream 100 bases:

>100_bases
GGCCCGTAAGTGTGCGATCCGGCCGATTACGCCGGATCGCGGTGGCTTTGTCGCAGATGTGAGACAATGTGCGCTGCGGA
ACCGCGCCGCCCCTCTACCG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MPTDIAHAERVYETARHRSAAASSPIIASWRRCMVKHRLAPEENRKPIFLSEIEFRRARESAAGLIAESTDELDRIFHSV
GKSGCCLLLTDAQGVALERRGASGDDRDFRALGLWNGAVWSEESVGTNGIGTALVDERSVVVYRDQHFFTSNTELCCTTA
PIRDHTGRVTGALDISTCRDDINEMTFSFVTQAVKDAAQRIEGNLFRRAFPGARIVVVPTGFGAAMSLLAVDQDDLVLGA
TRAARLALKLDDIRIAQGLPAADILQEQRHDGGSDLAEAERSALRRVLSRTNGNVTQAASLLGISRATLHRKMKKFDVH

Sequences:

>Translated_319_residues
MPTDIAHAERVYETARHRSAAASSPIIASWRRCMVKHRLAPEENRKPIFLSEIEFRRARESAAGLIAESTDELDRIFHSV
GKSGCCLLLTDAQGVALERRGASGDDRDFRALGLWNGAVWSEESVGTNGIGTALVDERSVVVYRDQHFFTSNTELCCTTA
PIRDHTGRVTGALDISTCRDDINEMTFSFVTQAVKDAAQRIEGNLFRRAFPGARIVVVPTGFGAAMSLLAVDQDDLVLGA
TRAARLALKLDDIRIAQGLPAADILQEQRHDGGSDLAEAERSALRRVLSRTNGNVTQAASLLGISRATLHRKMKKFDVH
>Mature_318_residues
PTDIAHAERVYETARHRSAAASSPIIASWRRCMVKHRLAPEENRKPIFLSEIEFRRARESAAGLIAESTDELDRIFHSVG
KSGCCLLLTDAQGVALERRGASGDDRDFRALGLWNGAVWSEESVGTNGIGTALVDERSVVVYRDQHFFTSNTELCCTTAP
IRDHTGRVTGALDISTCRDDINEMTFSFVTQAVKDAAQRIEGNLFRRAFPGARIVVVPTGFGAAMSLLAVDQDDLVLGAT
RAARLALKLDDIRIAQGLPAADILQEQRHDGGSDLAEAERSALRRVLSRTNGNVTQAASLLGISRATLHRKMKKFDVH

Specific function: Required for sigma-54-dependent transcription of acoXABC [H]

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 34909; Mature: 34778

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTDIAHAERVYETARHRSAAASSPIIASWRRCMVKHRLAPEENRKPIFLSEIEFRRARE
CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHH
SAAGLIAESTDELDRIFHSVGKSGCCLLLTDAQGVALERRGASGDDRDFRALGLWNGAVW
HHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCCEEEEEEECCCCC
SEESVGTNGIGTALVDERSVVVYRDQHFFTSNTELCCTTAPIRDHTGRVTGALDISTCRD
CCCCCCCCCCCEEEECCCEEEEEECCEEECCCCCEEEECCCCCCCCCCEEEEEEHHHHHH
DINEMTFSFVTQAVKDAAQRIEGNLFRRAFPGARIVVVPTGFGAAMSLLAVDQDDLVLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHEECCCCEEEEC
TRAARLALKLDDIRIAQGLPAADILQEQRHDGGSDLAEAERSALRRVLSRTNGNVTQAAS
HHHHHEEEEECCCHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
LLGISRATLHRKMKKFDVH
HHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PTDIAHAERVYETARHRSAAASSPIIASWRRCMVKHRLAPEENRKPIFLSEIEFRRARE
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHHHHHH
SAAGLIAESTDELDRIFHSVGKSGCCLLLTDAQGVALERRGASGDDRDFRALGLWNGAVW
HHHHHHHCCHHHHHHHHHHHCCCCCEEEEECCCCCEEECCCCCCCCCCEEEEEEECCCCC
SEESVGTNGIGTALVDERSVVVYRDQHFFTSNTELCCTTAPIRDHTGRVTGALDISTCRD
CCCCCCCCCCCEEEECCCEEEEEECCEEECCCCCEEEECCCCCCCCCCEEEEEEHHHHHH
DINEMTFSFVTQAVKDAAQRIEGNLFRRAFPGARIVVVPTGFGAAMSLLAVDQDDLVLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHEECCCCEEEEC
TRAARLALKLDDIRIAQGLPAADILQEQRHDGGSDLAEAERSALRRVLSRTNGNVTQAAS
HHHHHEEEEECCCHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
LLGISRATLHRKMKKFDVH
HHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1378052 [H]