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The map label for this gene is yciR [C]

Identifier: 159185109

GI number: 159185109

Start: 2196345

End: 2198429

Strand: Reverse

Name: yciR [C]

Synonym: Atu2226

Alternate gene names: 159185109

Gene position: 2198429-2196345 (Counterclockwise)

Preceding gene: 15889508

Following gene: 15889501

Centisome position: 77.37

GC content: 59.23

Gene sequence:

>2085_bases
ATGTTCAAAGTTCTCCAGTGCCTCACCATCGATCACGACTATCGATACACCGCTGCGGCGGTTGTCGTGTGCATGCTCGG
AAGCTTCGTCACGATGCGTCTTTTTTCGAAAGCGCGTCTGGCGACGGGATTGCAGAAGGTCAACTGGCTGTTTCTGGCGG
GCGTCAATGGCGGCGCGGCGATTTGGACCACCCATTTCGTGGCGATGCTGGGCTATGTCGCGGCGGGCGATGTGGGTTAC
GATCCCTATCTGACCGGACTTTCTCTTCTTATCGCCATTACGACGACGACCGCCGGTTTCGGCATTTCCGCCTATGGCGG
CCGCAGCGTGCTGGTGGAAGCCGGCGGTACCATCCTCGGCCTCGGCATTGCGGCCATGCATTATACCGGCATGGCGGCCT
ATAATGTGCAGGGCATGATCTTCTGGGATCAGGCCTATGTCATCGCTTCGCTGGTGCTGGGATCGGTGCTCGGCGCCATT
GCGGTCAATCGCATTGCCCGGCCTCTCAACCGTTTCTGCCAATATAGTGCGGTGGCGTTTCTCATCCTCGCCATTGCCTC
GATGCACTATACCGGCATGGCCTCCATGTCGTTCGCCTTCGATCCGCGCATCATCATTCCGGAAAATCTGCTGCCGCCGG
CCATCATGGGCGGAGGCGCAATCGCGGTGACGCTGCTGCTTCTGGCGCTCGGACTTTCCACCTATGTCATCGACGCCCAG
TCCACCCAGCAGGCGGTTGCCCGCTATCGCCATCTTTCATTGCACGATCCGCTGACGGGTATTCCCAACCGCGCGGCATT
CATCGAACATCTCAACCGCCGCACGCGCCATATCTCCATGGGTGCGCATACCGCGCTTCTGTCGATCGATCTCGACCGTT
TCAAGGAAATCAACGACGTGCATGGCCACGCGGCCGGTGACGCCGTGCTGCGCGCCATCGCCGATCGGGCGAGTTCCGTG
CTGAAGGCCGGTGAATTCCTGGCGCGCATGGGCGGCGATGAATTCGTGGCGATGACCCATTCCTATTACACCCGGGCCGA
TGGTGCAGAATTCGCGCAGCGACTGATCGAGCAGATCAGCAAGCCAGTCGAATGGAACGGCCAGACATTTTCGGTCGGCG
CAAGTGTCGGCATATCGGTCCGCAACACCGGCTCCATCGATGCCGATACCCTGATGGCGCAGGCCGATGTTGCCATGTAC
CGGGCGAAAAGCGCGACGTCTGACACGATCTGCTTTTATGACAAATCCATGGACGAGGCCGCGCGCGCGCGCAATGCGCT
TGCCATCGCCATGCGCAGCGGCCTCGCCAATAACGAGTTCGAGCTTTATTACCAGCAGCAGAACGACACCAAAAGCGGCA
GCATTGTCGGTTTCGAGGCGCTTCTGCGCTGGAAACATCCCGAACGCGGCATGGTATCTCCCGTCGAATTCATTCCGATT
GCCGAACAGACCGGCTTCATCGTCGAACTGGGCGAATGGGTTCTGAGAGAAGCATGCGCGCAGGCTGCGCGGTGGAAAAA
GTCACTCGCCATTGCCGTCAACGTCGCGCCGCAGCAGCTTGCGGATAATGATTTCCCCGACAAGGTTGAGAGAATTCTTG
CAGAGACGGGACTTGCGCCGGAAAGGCTCGAGCTTGAAATTACCGAAGGCAGCATCATCGCCGATCATCGCCACGCGCTC
GTCACCATCCGCAAGCTCAAGTCGCTCGGCGTCAAGATCGCCATGGACGACTACGGTACGGGTTATTCCTCGCTTTCGAC
CCTGCAGAGCTTCCCCTTCGACAAGATCAAGATCGACCGCGCCTTCATCGATGGCCTGTCCACCAATGTGCAGTCGGAGG
CGATTGTTCGCTCGACGCTCATTCTGGCGCACAGCCTGAATATTCCGGTGCTTGCAGAGGGAGTGGAGACGAAGGCCCAT
ATTGAATTCCTGCGGCGTGAAGGCTGCTTGCAGGTGCAGGGCTTCTTTTTCGGCAAGCCCGGTCCGCTGACCTCCATCGC
CAATCTCGTGGACGACACGTTCCTCTCGGCGGAGGATGAAACGGAAGAGGCCTCCGGCCGGCGTTATATCAAGGTGGTTC
GTTAG

Upstream 100 bases:

>100_bases
GGGTGTTGCAACTTTTAATATATGCTTATCCATGCACATAAACCGGGTGAAAACTTGGCGAATGGTAAGGCTACGCAGAA
TTCCAATTGCGTAGATGACA

Downstream 100 bases:

>100_bases
TCCGGCGCAGCCAGCGGGTGCCCCGGCAGGACCGGTCGCGAAGTTTTTTGTTGAAACATGCACGCTTCCAGCGCACCATC
GCATAAAAGCTTTGGGAGGA

Product: GGDEF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 694; Mature: 694

Protein sequence:

>694_residues
MFKVLQCLTIDHDYRYTAAAVVVCMLGSFVTMRLFSKARLATGLQKVNWLFLAGVNGGAAIWTTHFVAMLGYVAAGDVGY
DPYLTGLSLLIAITTTTAGFGISAYGGRSVLVEAGGTILGLGIAAMHYTGMAAYNVQGMIFWDQAYVIASLVLGSVLGAI
AVNRIARPLNRFCQYSAVAFLILAIASMHYTGMASMSFAFDPRIIIPENLLPPAIMGGGAIAVTLLLLALGLSTYVIDAQ
STQQAVARYRHLSLHDPLTGIPNRAAFIEHLNRRTRHISMGAHTALLSIDLDRFKEINDVHGHAAGDAVLRAIADRASSV
LKAGEFLARMGGDEFVAMTHSYYTRADGAEFAQRLIEQISKPVEWNGQTFSVGASVGISVRNTGSIDADTLMAQADVAMY
RAKSATSDTICFYDKSMDEAARARNALAIAMRSGLANNEFELYYQQQNDTKSGSIVGFEALLRWKHPERGMVSPVEFIPI
AEQTGFIVELGEWVLREACAQAARWKKSLAIAVNVAPQQLADNDFPDKVERILAETGLAPERLELEITEGSIIADHRHAL
VTIRKLKSLGVKIAMDDYGTGYSSLSTLQSFPFDKIKIDRAFIDGLSTNVQSEAIVRSTLILAHSLNIPVLAEGVETKAH
IEFLRREGCLQVQGFFFGKPGPLTSIANLVDDTFLSAEDETEEASGRRYIKVVR

Sequences:

>Translated_694_residues
MFKVLQCLTIDHDYRYTAAAVVVCMLGSFVTMRLFSKARLATGLQKVNWLFLAGVNGGAAIWTTHFVAMLGYVAAGDVGY
DPYLTGLSLLIAITTTTAGFGISAYGGRSVLVEAGGTILGLGIAAMHYTGMAAYNVQGMIFWDQAYVIASLVLGSVLGAI
AVNRIARPLNRFCQYSAVAFLILAIASMHYTGMASMSFAFDPRIIIPENLLPPAIMGGGAIAVTLLLLALGLSTYVIDAQ
STQQAVARYRHLSLHDPLTGIPNRAAFIEHLNRRTRHISMGAHTALLSIDLDRFKEINDVHGHAAGDAVLRAIADRASSV
LKAGEFLARMGGDEFVAMTHSYYTRADGAEFAQRLIEQISKPVEWNGQTFSVGASVGISVRNTGSIDADTLMAQADVAMY
RAKSATSDTICFYDKSMDEAARARNALAIAMRSGLANNEFELYYQQQNDTKSGSIVGFEALLRWKHPERGMVSPVEFIPI
AEQTGFIVELGEWVLREACAQAARWKKSLAIAVNVAPQQLADNDFPDKVERILAETGLAPERLELEITEGSIIADHRHAL
VTIRKLKSLGVKIAMDDYGTGYSSLSTLQSFPFDKIKIDRAFIDGLSTNVQSEAIVRSTLILAHSLNIPVLAEGVETKAH
IEFLRREGCLQVQGFFFGKPGPLTSIANLVDDTFLSAEDETEEASGRRYIKVVR
>Mature_694_residues
MFKVLQCLTIDHDYRYTAAAVVVCMLGSFVTMRLFSKARLATGLQKVNWLFLAGVNGGAAIWTTHFVAMLGYVAAGDVGY
DPYLTGLSLLIAITTTTAGFGISAYGGRSVLVEAGGTILGLGIAAMHYTGMAAYNVQGMIFWDQAYVIASLVLGSVLGAI
AVNRIARPLNRFCQYSAVAFLILAIASMHYTGMASMSFAFDPRIIIPENLLPPAIMGGGAIAVTLLLLALGLSTYVIDAQ
STQQAVARYRHLSLHDPLTGIPNRAAFIEHLNRRTRHISMGAHTALLSIDLDRFKEINDVHGHAAGDAVLRAIADRASSV
LKAGEFLARMGGDEFVAMTHSYYTRADGAEFAQRLIEQISKPVEWNGQTFSVGASVGISVRNTGSIDADTLMAQADVAMY
RAKSATSDTICFYDKSMDEAARARNALAIAMRSGLANNEFELYYQQQNDTKSGSIVGFEALLRWKHPERGMVSPVEFIPI
AEQTGFIVELGEWVLREACAQAARWKKSLAIAVNVAPQQLADNDFPDKVERILAETGLAPERLELEITEGSIIADHRHAL
VTIRKLKSLGVKIAMDDYGTGYSSLSTLQSFPFDKIKIDRAFIDGLSTNVQSEAIVRSTLILAHSLNIPVLAEGVETKAH
IEFLRREGCLQVQGFFFGKPGPLTSIANLVDDTFLSAEDETEEASGRRYIKVVR

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=428, Percent_Identity=34.1121495327103, Blast_Score=264, Evalue=1e-71,
Organism=Escherichia coli, GI87081921, Length=415, Percent_Identity=32.5301204819277, Blast_Score=235, Evalue=8e-63,
Organism=Escherichia coli, GI226510982, Length=436, Percent_Identity=28.2110091743119, Blast_Score=189, Evalue=8e-49,
Organism=Escherichia coli, GI1787055, Length=246, Percent_Identity=37.3983739837398, Blast_Score=150, Evalue=2e-37,
Organism=Escherichia coli, GI1788502, Length=258, Percent_Identity=33.3333333333333, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1790496, Length=235, Percent_Identity=30.6382978723404, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081980, Length=232, Percent_Identity=34.9137931034483, Blast_Score=137, Evalue=3e-33,
Organism=Escherichia coli, GI87081845, Length=234, Percent_Identity=33.3333333333333, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=31.063829787234, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=30.8016877637131, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI87082096, Length=448, Percent_Identity=24.5535714285714, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1788849, Length=258, Percent_Identity=29.0697674418605, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1788381, Length=402, Percent_Identity=26.1194029850746, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI87081977, Length=161, Percent_Identity=35.4037267080745, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI87081881, Length=172, Percent_Identity=33.1395348837209, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1788956, Length=160, Percent_Identity=33.125, Blast_Score=79, Evalue=8e-16,
Organism=Escherichia coli, GI1787802, Length=153, Percent_Identity=30.0653594771242, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI87082007, Length=210, Percent_Identity=30.952380952381, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787410, Length=152, Percent_Identity=31.5789473684211, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=27.2189349112426, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI145693134, Length=175, Percent_Identity=31.4285714285714, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1789650, Length=448, Percent_Identity=21.6517857142857, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=166, Percent_Identity=31.3253012048193, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786584, Length=160, Percent_Identity=30.625, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 75371; Mature: 75371

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKVLQCLTIDHDYRYTAAAVVVCMLGSFVTMRLFSKARLATGLQKVNWLFLAGVNGGAA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCHH
IWTTHFVAMLGYVAAGDVGYDPYLTGLSLLIAITTTTAGFGISAYGGRSVLVEAGGTILG
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEECCCCCCEECCCCCEEEEECCCCEEE
LGIAAMHYTGMAAYNVQGMIFWDQAYVIASLVLGSVLGAIAVNRIARPLNRFCQYSAVAF
HHHHHHHHCCEEEEECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LILAIASMHYTGMASMSFAFDPRIIIPENLLPPAIMGGGAIAVTLLLLALGLSTYVIDAQ
HHHHHHHHHHCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCHHHEEEECC
STQQAVARYRHLSLHDPLTGIPNRAAFIEHLNRRTRHISMGAHTALLSIDLDRFKEINDV
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCEEEEEEEHHHHHHHHHH
HGHAAGDAVLRAIADRASSVLKAGEFLARMGGDEFVAMTHSYYTRADGAEFAQRLIEQIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHC
KPVEWNGQTFSVGASVGISVRNTGSIDADTLMAQADVAMYRAKSATSDTICFYDKSMDEA
CCCCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHH
ARARNALAIAMRSGLANNEFELYYQQQNDTKSGSIVGFEALLRWKHPERGMVSPVEFIPI
HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEHHHHHHCCCCCCCCCCCHHEEEC
AEQTGFIVELGEWVLREACAQAARWKKSLAIAVNVAPQQLADNDFPDKVERILAETGLAP
CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHCCCCCHHHHHHHHHHCCCCC
ERLELEITEGSIIADHRHALVTIRKLKSLGVKIAMDDYGTGYSSLSTLQSFPFDKIKIDR
CCEEEEEECCCEEECCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEEHH
AFIDGLSTNVQSEAIVRSTLILAHSLNIPVLAEGVETKAHIEFLRREGCLQVQGFFFGKP
HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCEEEEEEEECCC
GPLTSIANLVDDTFLSAEDETEEASGRRYIKVVR
CCHHHHHHHHHHHHCCCCCCCHHCCCCEEEEEEC
>Mature Secondary Structure
MFKVLQCLTIDHDYRYTAAAVVVCMLGSFVTMRLFSKARLATGLQKVNWLFLAGVNGGAA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCHH
IWTTHFVAMLGYVAAGDVGYDPYLTGLSLLIAITTTTAGFGISAYGGRSVLVEAGGTILG
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEECCCCCCEECCCCCEEEEECCCCEEE
LGIAAMHYTGMAAYNVQGMIFWDQAYVIASLVLGSVLGAIAVNRIARPLNRFCQYSAVAF
HHHHHHHHCCEEEEECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LILAIASMHYTGMASMSFAFDPRIIIPENLLPPAIMGGGAIAVTLLLLALGLSTYVIDAQ
HHHHHHHHHHCCCCCEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHHHHCHHHEEEECC
STQQAVARYRHLSLHDPLTGIPNRAAFIEHLNRRTRHISMGAHTALLSIDLDRFKEINDV
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCCEEEEEEEHHHHHHHHHH
HGHAAGDAVLRAIADRASSVLKAGEFLARMGGDEFVAMTHSYYTRADGAEFAQRLIEQIS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHC
KPVEWNGQTFSVGASVGISVRNTGSIDADTLMAQADVAMYRAKSATSDTICFYDKSMDEA
CCCCCCCCEEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHH
ARARNALAIAMRSGLANNEFELYYQQQNDTKSGSIVGFEALLRWKHPERGMVSPVEFIPI
HHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCEEEHHHHHHCCCCCCCCCCCHHEEEC
AEQTGFIVELGEWVLREACAQAARWKKSLAIAVNVAPQQLADNDFPDKVERILAETGLAP
CCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHCCCCCHHHHHHHHHHCCCCC
ERLELEITEGSIIADHRHALVTIRKLKSLGVKIAMDDYGTGYSSLSTLQSFPFDKIKIDR
CCEEEEEECCCEEECCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEEHH
AFIDGLSTNVQSEAIVRSTLILAHSLNIPVLAEGVETKAHIEFLRREGCLQVQGFFFGKP
HHHCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHCCCEEEEEEEECCC
GPLTSIANLVDDTFLSAEDETEEASGRRYIKVVR
CCHHHHHHHHHHHHCCCCCCCHHCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]