Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15889150
Identifier: 15889150
GI number: 15889150
Start: 1829261
End: 1829851
Strand: Direct
Name: 15889150
Synonym: Atu1849
Alternate gene names: NA
Gene position: 1829261-1829851 (Clockwise)
Preceding gene: 15889149
Following gene: 159184945
Centisome position: 64.37
GC content: 57.19
Gene sequence:
>591_bases ATGGCAGCATTCGGTTCCACATCCATCAGGGTACTGTTCGCTCTTGCAATGGTCTTTGCAGCATTTGTGCTTGCGGATGT CACATCGGCCATCGCCGCCGACGGTACGGTATTCGACGAACTGCGGTTCGGGGTCACAACCTCTGTCACCAGCCGCGATA GCGGCGGTGAAGATGGCGCATTCCCGGCCTTTACCGCCTATTTTGATCCCTTTGCGAGCGCCTCAGCTGTCACCCTCGGC GAAAAACTCGCCCGCCCGCGTCTGCATCTGGGCGGCGAAATCGGCACCGAGGGAGAGGCGGATACCATTTACGGCGGCGT CAACTGGACCTTTGACCTCAATCCGAAGATTTTCGTCGACCTTGGCTTTGGTGGCCTATGGCATGACGGCAGACTGAAAA ACGGCCCTGGCGAAACGGGCGCGGAATTCGGTTGCCACCTGCTTTTTCATGAATATGCCGCTATCGGATATCGCTTCAAC AGCAACTGGAATATTTCGACCCAGATCGAACACGCCTCCCATGCCAATCTGTGCGACGGCCCCAATGACGGGCTGACGCG TGTCGGACTTATGGTCGGCTACAAGTTCTGA
Upstream 100 bases:
>100_bases CGAGTCATTCCTGCAACACGATTCCTAAATCAGTAACTCATTATTTACCGCACCAACAAATCTGCCATCCTTTCCCTACT TCGGAGCGGGGAATGATTCG
Downstream 100 bases:
>100_bases ATAAGCCAAGAAAGCAGCGTTTTGCCGGTAAAACTGCGCATTTTCCTGTCGCACGGAGAGGCCTCTTGCGCTAAAGAACC GGAAACTTTCCTCGGCTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 196; Mature: 195
Protein sequence:
>196_residues MAAFGSTSIRVLFALAMVFAAFVLADVTSAIAADGTVFDELRFGVTTSVTSRDSGGEDGAFPAFTAYFDPFASASAVTLG EKLARPRLHLGGEIGTEGEADTIYGGVNWTFDLNPKIFVDLGFGGLWHDGRLKNGPGETGAEFGCHLLFHEYAAIGYRFN SNWNISTQIEHASHANLCDGPNDGLTRVGLMVGYKF
Sequences:
>Translated_196_residues MAAFGSTSIRVLFALAMVFAAFVLADVTSAIAADGTVFDELRFGVTTSVTSRDSGGEDGAFPAFTAYFDPFASASAVTLG EKLARPRLHLGGEIGTEGEADTIYGGVNWTFDLNPKIFVDLGFGGLWHDGRLKNGPGETGAEFGCHLLFHEYAAIGYRFN SNWNISTQIEHASHANLCDGPNDGLTRVGLMVGYKF >Mature_195_residues AAFGSTSIRVLFALAMVFAAFVLADVTSAIAADGTVFDELRFGVTTSVTSRDSGGEDGAFPAFTAYFDPFASASAVTLGE KLARPRLHLGGEIGTEGEADTIYGGVNWTFDLNPKIFVDLGFGGLWHDGRLKNGPGETGAEFGCHLLFHEYAAIGYRFNS NWNISTQIEHASHANLCDGPNDGLTRVGLMVGYKF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20886; Mature: 20754
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAFGSTSIRVLFALAMVFAAFVLADVTSAIAADGTVFDELRFGVTTSVTSRDSGGEDGA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEECCCCCCCCCCC FPAFTAYFDPFASASAVTLGEKLARPRLHLGGEIGTEGEADTIYGGVNWTFDLNPKIFVD CCHHHHHHCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCEEECCEEEEEECCCEEEEE LGFGGLWHDGRLKNGPGETGAEFGCHLLFHEYAAIGYRFNSNWNISTQIEHASHANLCDG ECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCCCCCC PNDGLTRVGLMVGYKF CCCCHHHHHHEEECCC >Mature Secondary Structure AAFGSTSIRVLFALAMVFAAFVLADVTSAIAADGTVFDELRFGVTTSVTSRDSGGEDGA CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCEEEEECCCCCCCCCCC FPAFTAYFDPFASASAVTLGEKLARPRLHLGGEIGTEGEADTIYGGVNWTFDLNPKIFVD CCHHHHHHCCCCCCHHHHHHHHHCCCCEECCCCCCCCCCCCEEECCEEEEEECCCEEEEE LGFGGLWHDGRLKNGPGETGAEFGCHLLFHEYAAIGYRFNSNWNISTQIEHASHANLCDG ECCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCCEEEEECCCCCCCCCCC PNDGLTRVGLMVGYKF CCCCHHHHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA