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The map label for this gene is ydcR [C]

Identifier: 15889149

GI number: 15889149

Start: 1827730

End: 1829148

Strand: Direct

Name: ydcR [C]

Synonym: Atu1848

Alternate gene names: 15889149

Gene position: 1827730-1829148 (Clockwise)

Preceding gene: 15889147

Following gene: 15889150

Centisome position: 64.32

GC content: 61.38

Gene sequence:

>1419_bases
ATGACAAATTGGCTCCCTGACATCACCGAGGGCGACGGCCCGATTTACCTTCGCCTTGCCGATAGTATCGAAGGCGCGAT
TTCCGACGGAATCCTCCAGGCAGGCTCGAAACTGCCACCGCAGCGCAATCTCGCTTACGATCTCGGCGTAACAATCGGCA
CAATCAGCCGGGCCTATGGCCTTATTCACGAACGTGGCCTCGTCAGCGGCGAAGTCGGCCGCGGCACCTATGTCAATGAA
CGCAAGACCCCAGCGCCCTTATCGCCCGAGGAACCGTCCGTGTCGGCATTCGGTGGCACGCGCTACGCCCTCGACACCAG
CGCCGAATTCCGCCTGAACACCACCGCAGCGCCGGATGTCGGCCAGAGCGTTCTGGTCGGTAAACACGTCGAGGCCCTTG
CCAGAGAACATCCGTTCGAAATTTCCAACTACACCCGCACCTTTCCAGACAACTGGTGTATGGCGGGCGCCCGCTGGCTT
TCCCAGAACGGCTGGTCGCCGAAACCGGAAAACATCGTCTCCACGCTCGGCGCCCATGCGGGGGTGATGAGCGTGGTGAC
CGCAATGACGGCGCCGGGTGACCGCATCGTCTTCGAGCCCGTCACCTATTCCCACATCAGCCGCAGCGCCACCCTTGCCG
GGCGCCGCGTGACGCTGGTGGAGGTGGACGAAAAGGGTATCGTCCCCGATGATTTCGAGCGTGTCTGCGCCCAGCAACAT
CCCAAGATGATCTTCCTGATGTCAGCCGGCCAGAACCCCACCTGCGCCACCCTGCCCGAGGATCGGCGGCGGGCAATCGC
CGATATTGCCCGCAGATACGGCGTATGGATCGTGGAGGACAATCTCTACGGTGCCATGACCCGCGAGGCGATCCCGCTCA
TTGCGGAATTCGCACCCGATATCACCTTCGTTGTCGGTGGCCTGTCGAAATCCGTCGCCGCCGGTGTCAGGGGCGGCTGG
GTTGCCTGCCCGGCGCAATTTTCATCGAGAATACGAATTTCGCATTCGATGTTGACCGGCGGATTGCCCTTCATGCTGGC
CGAACTGAATGCGCGTCTCGTCAATAGCGGCGACGCAGATGATATCCGCAAGGATTGCATCGCCGAGATCAACGAGCGCG
AGGCAATCGCCAGACGCATCTTTGCCGGGCTGGAATTCAACTCCCTGCCCGATATCGCCTTCATGTGGCTGCGGCTGCCT
GAACCCTGGCTGTCGGGCACCTTCCGCAATGCCGCCATGAAGGAAGGCGTACTGATCGACGACGAGGACGAGTTCAAGGC
CGGCCGCTCGGAAAAGGTATTCCACCGCGTCCGCATCAGCTTTTCCGGCCCCTCCTCGCGCGAGGAACTGACGCATGCCT
TTGGCATCCTGCGCAATCTGCTCGACAACGGTTCATCCGGCTATGAAAGCGAGGCGTAA

Upstream 100 bases:

>100_bases
TGCGCATATTGCACCTATTGTCTCCGTGTGTTTGATGTCATTCAATGCAGACAATAAATACAATTGACTTGAGAACAGAT
ACAATGCATAAATTGTCACC

Downstream 100 bases:

>100_bases
GCGGTGCCTGGCCGAGTCATTCCTGCAACACGATTCCTAAATCAGTAACTCATTATTTACCGCACCAACAAATCTGCCAT
CCTTTCCCTACTTCGGAGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 472; Mature: 471

Protein sequence:

>472_residues
MTNWLPDITEGDGPIYLRLADSIEGAISDGILQAGSKLPPQRNLAYDLGVTIGTISRAYGLIHERGLVSGEVGRGTYVNE
RKTPAPLSPEEPSVSAFGGTRYALDTSAEFRLNTTAAPDVGQSVLVGKHVEALAREHPFEISNYTRTFPDNWCMAGARWL
SQNGWSPKPENIVSTLGAHAGVMSVVTAMTAPGDRIVFEPVTYSHISRSATLAGRRVTLVEVDEKGIVPDDFERVCAQQH
PKMIFLMSAGQNPTCATLPEDRRRAIADIARRYGVWIVEDNLYGAMTREAIPLIAEFAPDITFVVGGLSKSVAAGVRGGW
VACPAQFSSRIRISHSMLTGGLPFMLAELNARLVNSGDADDIRKDCIAEINEREAIARRIFAGLEFNSLPDIAFMWLRLP
EPWLSGTFRNAAMKEGVLIDDEDEFKAGRSEKVFHRVRISFSGPSSREELTHAFGILRNLLDNGSSGYESEA

Sequences:

>Translated_472_residues
MTNWLPDITEGDGPIYLRLADSIEGAISDGILQAGSKLPPQRNLAYDLGVTIGTISRAYGLIHERGLVSGEVGRGTYVNE
RKTPAPLSPEEPSVSAFGGTRYALDTSAEFRLNTTAAPDVGQSVLVGKHVEALAREHPFEISNYTRTFPDNWCMAGARWL
SQNGWSPKPENIVSTLGAHAGVMSVVTAMTAPGDRIVFEPVTYSHISRSATLAGRRVTLVEVDEKGIVPDDFERVCAQQH
PKMIFLMSAGQNPTCATLPEDRRRAIADIARRYGVWIVEDNLYGAMTREAIPLIAEFAPDITFVVGGLSKSVAAGVRGGW
VACPAQFSSRIRISHSMLTGGLPFMLAELNARLVNSGDADDIRKDCIAEINEREAIARRIFAGLEFNSLPDIAFMWLRLP
EPWLSGTFRNAAMKEGVLIDDEDEFKAGRSEKVFHRVRISFSGPSSREELTHAFGILRNLLDNGSSGYESEA
>Mature_471_residues
TNWLPDITEGDGPIYLRLADSIEGAISDGILQAGSKLPPQRNLAYDLGVTIGTISRAYGLIHERGLVSGEVGRGTYVNER
KTPAPLSPEEPSVSAFGGTRYALDTSAEFRLNTTAAPDVGQSVLVGKHVEALAREHPFEISNYTRTFPDNWCMAGARWLS
QNGWSPKPENIVSTLGAHAGVMSVVTAMTAPGDRIVFEPVTYSHISRSATLAGRRVTLVEVDEKGIVPDDFERVCAQQHP
KMIFLMSAGQNPTCATLPEDRRRAIADIARRYGVWIVEDNLYGAMTREAIPLIAEFAPDITFVVGGLSKSVAAGVRGGWV
ACPAQFSSRIRISHSMLTGGLPFMLAELNARLVNSGDADDIRKDCIAEINEREAIARRIFAGLEFNSLPDIAFMWLRLPE
PWLSGTFRNAAMKEGVLIDDEDEFKAGRSEKVFHRVRISFSGPSSREELTHAFGILRNLLDNGSSGYESEA

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=315, Percent_Identity=23.8095238095238, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI33469970, Length=315, Percent_Identity=23.8095238095238, Blast_Score=77, Evalue=3e-14,
Organism=Escherichia coli, GI1787710, Length=473, Percent_Identity=24.5243128964059, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790797, Length=339, Percent_Identity=26.2536873156342, Blast_Score=97, Evalue=3e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 51524; Mature: 51393

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNWLPDITEGDGPIYLRLADSIEGAISDGILQAGSKLPPQRNLAYDLGVTIGTISRAYG
CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHH
LIHERGLVSGEVGRGTYVNERKTPAPLSPEEPSVSAFGGTRYALDTSAEFRLNTTAAPDV
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCEEEECCCCCCC
GQSVLVGKHVEALAREHPFEISNYTRTFPDNWCMAGARWLSQNGWSPKPENIVSTLGAHA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
GVMSVVTAMTAPGDRIVFEPVTYSHISRSATLAGRRVTLVEVDEKGIVPDDFERVCAQQH
HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCC
PKMIFLMSAGQNPTCATLPEDRRRAIADIARRYGVWIVEDNLYGAMTREAIPLIAEFAPD
CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCC
ITFVVGGLSKSVAAGVRGGWVACPAQFSSRIRISHSMLTGGLPFMLAELNARLVNSGDAD
CEEEECCHHHHHHHCCCCCEEECCHHHCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCCHH
DIRKDCIAEINEREAIARRIFAGLEFNSLPDIAFMWLRLPEPWLSGTFRNAAMKEGVLID
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEECCCHHHCCCHHHHHHHCCCEEC
DEDEFKAGRSEKVFHRVRISFSGPSSREELTHAFGILRNLLDNGSSGYESEA
CCHHHHCCCCHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TNWLPDITEGDGPIYLRLADSIEGAISDGILQAGSKLPPQRNLAYDLGVTIGTISRAYG
CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHH
LIHERGLVSGEVGRGTYVNERKTPAPLSPEEPSVSAFGGTRYALDTSAEFRLNTTAAPDV
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCCEEEECCCCCCC
GQSVLVGKHVEALAREHPFEISNYTRTFPDNWCMAGARWLSQNGWSPKPENIVSTLGAHA
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
GVMSVVTAMTAPGDRIVFEPVTYSHISRSATLAGRRVTLVEVDEKGIVPDDFERVCAQQH
HHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHCC
PKMIFLMSAGQNPTCATLPEDRRRAIADIARRYGVWIVEDNLYGAMTREAIPLIAEFAPD
CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCC
ITFVVGGLSKSVAAGVRGGWVACPAQFSSRIRISHSMLTGGLPFMLAELNARLVNSGDAD
CEEEECCHHHHHHHCCCCCEEECCHHHCCEEEEEHHHHHCCHHHHHHHHHHHHCCCCCHH
DIRKDCIAEINEREAIARRIFAGLEFNSLPDIAFMWLRLPEPWLSGTFRNAAMKEGVLID
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHEEECCCHHHCCCHHHHHHHCCCEEC
DEDEFKAGRSEKVFHRVRISFSGPSSREELTHAFGILRNLLDNGSSGYESEA
CCHHHHCCCCHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]