Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15889147
Identifier: 15889147
GI number: 15889147
Start: 1826694
End: 1827098
Strand: Direct
Name: 15889147
Synonym: Atu1846
Alternate gene names: NA
Gene position: 1826694-1827098 (Clockwise)
Preceding gene: 15889146
Following gene: 15889149
Centisome position: 64.28
GC content: 63.46
Gene sequence:
>405_bases ATGTCTCTTGCTTTTCGACTGAATGCCTACAAAGCCACCGGACTGATCCTCGCAGCCGCCGCACTTGCCGCCTGCCAGCC GAAACCGCAGCCGGTCGCCTCCGTCTCCCGCGCTGCTTTGCCAACGATGGAGCGGATCGCGCTTGGTGCCAATGCCTGCT GGTTCAAATCGGGTGATGCGGCGTTCAAGGCCTATCGCCTCGCGCCGGAACTCAATTCTTTCTCGGGCCGCCCGCGCATC CTCCTCGTGCCGCGTAACAGCCCGGAATCGCGCCCCATGCTGGTGATCCAGGCAGAAGGCAACCCGGCAAAGCTCGATGC TTTCGGACCAGTGATGAGCGAAGCCATCTCCGGCCGCATCGCCACCGACGTTAAGCGCTGGGCGAATGGCGGCAAGGGCT GCTGA
Upstream 100 bases:
>100_bases CTCGGCGTCATCGCAGCCTGATGGACCGGGCGGGCTTCAAGCCCGCCTTTTTTGATGCCCGTTCGCGGCTGCCGCTTCGG CCTCTCTTCTGGATGACCTG
Downstream 100 bases:
>100_bases TTAACGAACACGGAAACGGGCTCTCGGCGGGCGCATAGGTGAGATGCCAGCCTTGATGATGCCCTATCCTTCCTCATCCC TGTGCTTGTCACAGGAATGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 134; Mature: 133
Protein sequence:
>134_residues MSLAFRLNAYKATGLILAAAALAACQPKPQPVASVSRAALPTMERIALGANACWFKSGDAAFKAYRLAPELNSFSGRPRI LLVPRNSPESRPMLVIQAEGNPAKLDAFGPVMSEAISGRIATDVKRWANGGKGC
Sequences:
>Translated_134_residues MSLAFRLNAYKATGLILAAAALAACQPKPQPVASVSRAALPTMERIALGANACWFKSGDAAFKAYRLAPELNSFSGRPRI LLVPRNSPESRPMLVIQAEGNPAKLDAFGPVMSEAISGRIATDVKRWANGGKGC >Mature_133_residues SLAFRLNAYKATGLILAAAALAACQPKPQPVASVSRAALPTMERIALGANACWFKSGDAAFKAYRLAPELNSFSGRPRIL LVPRNSPESRPMLVIQAEGNPAKLDAFGPVMSEAISGRIATDVKRWANGGKGC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14141; Mature: 14009
Theoretical pI: Translated: 10.73; Mature: 10.73
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLAFRLNAYKATGLILAAAALAACQPKPQPVASVSRAALPTMERIALGANACWFKSGDA CCEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHCCCCCEEEECCCC AFKAYRLAPELNSFSGRPRILLVPRNSPESRPMLVIQAEGNPAKLDAFGPVMSEAISGRI CEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEECHHHHHHHHHHCCCH ATDVKRWANGGKGC HHHHHHHCCCCCCC >Mature Secondary Structure SLAFRLNAYKATGLILAAAALAACQPKPQPVASVSRAALPTMERIALGANACWFKSGDA CEEEEECCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHCCCCCEEEECCCC AFKAYRLAPELNSFSGRPRILLVPRNSPESRPMLVIQAEGNPAKLDAFGPVMSEAISGRI CEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCEECHHHHHHHHHHCCCH ATDVKRWANGGKGC HHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA