| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is gno [H]
Identifier: 15888733
GI number: 15888733
Start: 1401791
End: 1402561
Strand: Direct
Name: gno [H]
Synonym: Atu1407
Alternate gene names: 15888733
Gene position: 1401791-1402561 (Clockwise)
Preceding gene: 15888732
Following gene: 159184747
Centisome position: 49.33
GC content: 60.57
Gene sequence:
>771_bases ATGAGCAATCAGATCATCTTCGATCTCGGCGGGCGCACGGCGCTTGTTACCGGTTCTTCACGCGGCCTCGGCCGCGCAAT GGCAGAAGGACTTGCCGTCGCGGGGGCACGCATCCTCATTAACGGCACCGATCCGTCGCGTGTCGCGCAAACGGTTCAGG AGTTTCGCAATGTCGGCCATGACGCCGAGGCGGTCGCCTTTGACGTCACCTCCGAAAGCGAAATCATTGAGGCTTTCGCC AGGCTTGATGAGCAGGGGATAGACGTCGACATTCTCGTCAACAATGCCGGCATCCAGTTCCGCAAACCGATGATCGAGCT GGAGACGGCCGACTGGCAGCGGGTAATCGACACCAACCTCACTAGCGCCTTCATGATTGGCCGTGAGGCGGCAAAACGGA TGATCCCGCGGGGATATGGCAAGATCGTCAATATCGGCTCGCTGACCAGCGAACTGGCCCGCGCGACGGTGGCGCCCTAC ACCGTGGCCAAGGGCGGCATCAAGATGCTGACCCGCGCCATGGCGGCGGAATGGGCGCAATACGGCATTCAGGCGAACGC CATCGGCCCCGGCTACATGCTGACCGACATGAATCAGGCATTGATCGACAATCCGGAATTTGACGCCTGGGTGAAGGCGC GCACGCCCGCGAAACGCTGGGGCAAGCCGCAGGAACTTGTCGGAACCGCCGTGTTCCTGTCTGCTTCGGCCTCCGACTAC GTCAATGGCCAGATAATCTATGTCGATGGTGGAATGCTGTCGGTTCTCTAG
Upstream 100 bases:
>100_bases CTGCCGATGGAAGGACCCGGCCTCGGGACCGAATTGCTGCCCAAGGTCTTCGAGCGGCCGGACCTGACGGTCCGCGTCAG CACGCTGTGAGGAGGGCATC
Downstream 100 bases:
>100_bases AACCGCCGCCATCCTTGATGCCAACAGAAATTGGCGGGAGGAGACGCGCATGCGCGGAGTCGTCATTCATGCAGCAAAAG ACCTGCGGGTAGAGGACGTT
Product: gluconate dehydrogenase
Products: NA
Alternate protein names: 5-keto-D-gluconate 5-reductase [H]
Number of amino acids: Translated: 256; Mature: 255
Protein sequence:
>256_residues MSNQIIFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFA RLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPY TVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVFLSASASDY VNGQIIYVDGGMLSVL
Sequences:
>Translated_256_residues MSNQIIFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFA RLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPY TVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVFLSASASDY VNGQIIYVDGGMLSVL >Mature_255_residues SNQIIFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFAR LDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPYT VAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVFLSASASDYV NGQIIYVDGGMLSVL
Specific function: Involved in the non-phosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate. Dependent on NADP, almost inactive with NAD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=30.1204819277108, Blast_Score=115, Evalue=4e-26, Organism=Homo sapiens, GI7705925, Length=245, Percent_Identity=28.9795918367347, Blast_Score=109, Evalue=2e-24, Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=29.1828793774319, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI32483357, Length=251, Percent_Identity=27.8884462151394, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI15277342, Length=268, Percent_Identity=26.4925373134328, Blast_Score=93, Evalue=2e-19, Organism=Homo sapiens, GI4503301, Length=224, Percent_Identity=26.3392857142857, Blast_Score=88, Evalue=6e-18, Organism=Homo sapiens, GI20149619, Length=190, Percent_Identity=28.4210526315789, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=26.8292682926829, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI209862901, Length=197, Percent_Identity=31.4720812182741, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI19923983, Length=197, Percent_Identity=31.4720812182741, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI66933014, Length=249, Percent_Identity=26.5060240963855, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI109715829, Length=243, Percent_Identity=26.3374485596708, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI59889578, Length=233, Percent_Identity=30.0429184549356, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4504505, Length=231, Percent_Identity=30.7359307359307, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI10190704, Length=242, Percent_Identity=23.5537190082645, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=28.90625, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI126723750, Length=254, Percent_Identity=25.5905511811024, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI210032110, Length=206, Percent_Identity=22.8155339805825, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7705855, Length=211, Percent_Identity=24.1706161137441, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI31542939, Length=196, Percent_Identity=29.5918367346939, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI226371731, Length=193, Percent_Identity=27.979274611399, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI83715985, Length=256, Percent_Identity=27.34375, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI33667109, Length=197, Percent_Identity=26.3959390862944, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=45.5645161290323, Blast_Score=241, Evalue=3e-65, Organism=Escherichia coli, GI87082160, Length=251, Percent_Identity=43.4262948207171, Blast_Score=184, Evalue=6e-48, Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=41.6, Blast_Score=174, Evalue=4e-45, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=34.2857142857143, Blast_Score=155, Evalue=3e-39, Organism=Escherichia coli, GI1787905, Length=255, Percent_Identity=33.3333333333333, Blast_Score=127, Evalue=6e-31, Organism=Escherichia coli, GI2367175, Length=244, Percent_Identity=34.8360655737705, Blast_Score=123, Evalue=1e-29, Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=32.6693227091633, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=30.327868852459, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1789057, Length=255, Percent_Identity=27.843137254902, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1786812, Length=252, Percent_Identity=27.7777777777778, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI2367365, Length=241, Percent_Identity=28.6307053941909, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1789378, Length=257, Percent_Identity=29.9610894941634, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1787820, Length=195, Percent_Identity=27.1794871794872, Blast_Score=74, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560676, Length=246, Percent_Identity=28.4552845528455, Blast_Score=114, Evalue=3e-26, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=30.4, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=30.2788844621514, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17562906, Length=271, Percent_Identity=29.1512915129151, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17536651, Length=249, Percent_Identity=30.1204819277108, Blast_Score=107, Evalue=8e-24, Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=28.0487804878049, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17562908, Length=271, Percent_Identity=29.1512915129151, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=31.5175097276265, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17561272, Length=254, Percent_Identity=31.496062992126, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=29.1666666666667, Blast_Score=97, Evalue=6e-21, Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=28.2442748091603, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17560150, Length=272, Percent_Identity=30.5147058823529, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI115534694, Length=249, Percent_Identity=26.9076305220884, Blast_Score=96, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=30.6818181818182, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17561402, Length=259, Percent_Identity=30.1158301158301, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=29.5880149812734, Blast_Score=91, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=27.7153558052434, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=29.5019157088123, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=25, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=27.9850746268657, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=27.6923076923077, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=29.6875, Blast_Score=84, Evalue=9e-17, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=25.296442687747, Blast_Score=84, Evalue=1e-16, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=26.9230769230769, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17565030, Length=255, Percent_Identity=30.1960784313725, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=28.4090909090909, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17538480, Length=265, Percent_Identity=26.4150943396226, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193203117, Length=199, Percent_Identity=27.1356783919598, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=26.5384615384615, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=27.6041666666667, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17568967, Length=220, Percent_Identity=29.0909090909091, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17551412, Length=262, Percent_Identity=25.9541984732824, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17507613, Length=253, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71997099, Length=235, Percent_Identity=28.5106382978723, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI32563809, Length=253, Percent_Identity=26.0869565217391, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17508651, Length=248, Percent_Identity=23.7903225806452, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17564282, Length=190, Percent_Identity=24.7368421052632, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17557668, Length=216, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17508895, Length=200, Percent_Identity=27, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17559552, Length=196, Percent_Identity=28.0612244897959, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI86565303, Length=258, Percent_Identity=26.3565891472868, Blast_Score=65, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=246, Percent_Identity=23.9837398373984, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6322861, Length=190, Percent_Identity=30, Blast_Score=77, Evalue=4e-15, Organism=Saccharomyces cerevisiae, GI6323882, Length=203, Percent_Identity=29.064039408867, Blast_Score=66, Evalue=5e-12, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=31.6, Blast_Score=114, Evalue=4e-26, Organism=Drosophila melanogaster, GI24643142, Length=244, Percent_Identity=29.5081967213115, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=26.984126984127, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI23397609, Length=251, Percent_Identity=27.0916334661355, Blast_Score=103, Evalue=9e-23, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=26, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=28.6290322580645, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=26.8292682926829, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI24640492, Length=204, Percent_Identity=29.4117647058824, Blast_Score=84, Evalue=6e-17, Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=27.0916334661355, Blast_Score=83, Evalue=1e-16, Organism=Drosophila melanogaster, GI24649181, Length=192, Percent_Identity=30.2083333333333, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI28574402, Length=197, Percent_Identity=28.9340101522843, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI24584744, Length=197, Percent_Identity=28.9340101522843, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI18859837, Length=193, Percent_Identity=33.160621761658, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24584752, Length=242, Percent_Identity=27.6859504132231, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI17737361, Length=254, Percent_Identity=29.1338582677165, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI281364892, Length=205, Percent_Identity=26.8292682926829, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI21358495, Length=201, Percent_Identity=26.3681592039801, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=29.2397660818713, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24581726, Length=194, Percent_Identity=28.3505154639175, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI24640442, Length=212, Percent_Identity=24.0566037735849, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI21357673, Length=220, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076933, Length=193, Percent_Identity=25.9067357512953, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24584748, Length=193, Percent_Identity=25.9067357512953, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.69 [H]
Molecular weight: Translated: 27542; Mature: 27411
Theoretical pI: Translated: 4.93; Mature: 4.93
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNQIIFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGH CCCCEEEEECCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC DAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNL CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCEEEEECCHHHHHHHCCC TSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPYTVAKGGIKMLTRAMAAEWAQ HHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH YGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVFLSASASDY HCCEECCCCCCEEEECCCHHHCCCCCCCEEEEECCCHHHCCCHHHHHHHHEEEECCCCCC VNGQIIYVDGGMLSVL CCCEEEEECCCEEECC >Mature Secondary Structure SNQIIFDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGH CCCEEEEECCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC DAEAVAFDVTSESEIIEAFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNL CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCEEECCEEEEECCHHHHHHHCCC TSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPYTVAKGGIKMLTRAMAAEWAQ HHHHHHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH YGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTAVFLSASASDY HCCEECCCCCCEEEECCCHHHCCCCCCCEEEEECCCHHHCCCHHHHHHHHEEEECCCCCC VNGQIIYVDGGMLSVL CCCEEEEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7751271 [H]