| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is yciK [H]
Identifier: 15888417
GI number: 15888417
Start: 1066088
End: 1066828
Strand: Reverse
Name: yciK [H]
Synonym: Atu1074
Alternate gene names: 15888417
Gene position: 1066828-1066088 (Counterclockwise)
Preceding gene: 15888418
Following gene: 15888416
Centisome position: 37.54
GC content: 64.78
Gene sequence:
>741_bases ATGACTATCGATCTCAAGGGCCGCATCGCTCTCGTTACCGGCGCTTCGCGCGGCATCGGCTATTTCACGGCGCTGGAACT GGCCAAGGCCGGCGCGCATGTCATCGCCTGCGCCCGCACGGTCGGCGGCCTTGAGGAGCTTGACGACGCCATCAAGGCCG TTGGCGGCACGGCGACGCTGGTTCCCTTCGATCTCGCCGACATGAAAGCCATCGATGCGCTGGGCGCCAATATCTACGAG CGCTGGGGCAAGCTCGATATTCTGGTCGCCAATGCCGGCGTTCTCGGCGTGATTTCCCCGGTTGGCCATATCGAGGCGAA GGTCTTCGAAAGGGTCATGAACATCAACGTCACCGCCACCTGGCGGCTGATCCGCTCGGTGGAGCCGCTGCTGTTGAAAT CGGATGCCGGCCGTGCGCTGATTCTGTCTTCGGGTGTCGCCCATAGCTGTCGCCCCTTCTGGGGCGTCTACGCCACCTCC AAGGCCGCCGTGGAAGCGCTCGCCCGCACCTGGGCCGCGGAAACGCAGAAGTCCCCGCTGCGCATCAACAGCATCAATCC CGGCGCCACGCGCACCGCCATGCGCGCCCAGGCCATGCCCGGCGAGGACCCGGCAACCGTGCCGCATCCGTCCGAAGTTG CCGCTGCCATCCTTCCCCTCGCCTCGCCCGACCTTACCGAAACCGGCAAGCTCTTCCTGGTGCGCGACAAGAAATTCGTG GAATATCGCCAGCCGGAATAA
Upstream 100 bases:
>100_bases TTCTTGCCTTTTGTTCAGGCCGGTGCGTGCGACGATATGATCGCTTGCGAAAGGCCGGCAGCGCTTCGTAGAAGGAAGCG CAATCATTTCGGGGGAGACC
Downstream 100 bases:
>100_bases GCTTTTGGCCAGCGTCATTACGGCACCGGCGAGAAACGCTTGACCACACAGAACCGCCGCGCCATAAGGCAAGGTATGAA AACAACGATCTGCACCTGCT
Product: NAD/NADP dependent oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MTIDLKGRIALVTGASRGIGYFTALELAKAGAHVIACARTVGGLEELDDAIKAVGGTATLVPFDLADMKAIDALGANIYE RWGKLDILVANAGVLGVISPVGHIEAKVFERVMNINVTATWRLIRSVEPLLLKSDAGRALILSSGVAHSCRPFWGVYATS KAAVEALARTWAAETQKSPLRINSINPGATRTAMRAQAMPGEDPATVPHPSEVAAAILPLASPDLTETGKLFLVRDKKFV EYRQPE
Sequences:
>Translated_246_residues MTIDLKGRIALVTGASRGIGYFTALELAKAGAHVIACARTVGGLEELDDAIKAVGGTATLVPFDLADMKAIDALGANIYE RWGKLDILVANAGVLGVISPVGHIEAKVFERVMNINVTATWRLIRSVEPLLLKSDAGRALILSSGVAHSCRPFWGVYATS KAAVEALARTWAAETQKSPLRINSINPGATRTAMRAQAMPGEDPATVPHPSEVAAAILPLASPDLTETGKLFLVRDKKFV EYRQPE >Mature_245_residues TIDLKGRIALVTGASRGIGYFTALELAKAGAHVIACARTVGGLEELDDAIKAVGGTATLVPFDLADMKAIDALGANIYER WGKLDILVANAGVLGVISPVGHIEAKVFERVMNINVTATWRLIRSVEPLLLKSDAGRALILSSGVAHSCRPFWGVYATSK AAVEALARTWAAETQKSPLRINSINPGATRTAMRAQAMPGEDPATVPHPSEVAAAILPLASPDLTETGKLFLVRDKKFVE YRQPE
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=207, Percent_Identity=32.8502415458937, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=29.4736842105263, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI7657478, Length=214, Percent_Identity=28.0373831775701, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI33667109, Length=194, Percent_Identity=28.3505154639175, Blast_Score=78, Evalue=6e-15, Organism=Homo sapiens, GI5031737, Length=194, Percent_Identity=28.3505154639175, Blast_Score=78, Evalue=7e-15, Organism=Homo sapiens, GI7705925, Length=242, Percent_Identity=29.3388429752066, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI109715829, Length=246, Percent_Identity=29.6747967479675, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI223718074, Length=197, Percent_Identity=29.4416243654822, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI4557649, Length=192, Percent_Identity=28.6458333333333, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI142976729, Length=231, Percent_Identity=25.974025974026, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI19923817, Length=248, Percent_Identity=27.4193548387097, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI209862901, Length=239, Percent_Identity=28.4518828451883, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI19923983, Length=239, Percent_Identity=28.4518828451883, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI40254986, Length=206, Percent_Identity=29.126213592233, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI157739938, Length=193, Percent_Identity=24.3523316062176, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=24.6963562753036, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI7706318, Length=209, Percent_Identity=25.3588516746411, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI66933014, Length=194, Percent_Identity=33.5051546391753, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1787526, Length=232, Percent_Identity=39.6551724137931, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI87082100, Length=242, Percent_Identity=33.4710743801653, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1787335, Length=230, Percent_Identity=28.2608695652174, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789378, Length=194, Percent_Identity=31.9587628865979, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1790717, Length=192, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI2367175, Length=204, Percent_Identity=33.8235294117647, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1787905, Length=228, Percent_Identity=32.0175438596491, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1786812, Length=243, Percent_Identity=26.7489711934156, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1786701, Length=182, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787820, Length=182, Percent_Identity=27.4725274725275, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87082160, Length=252, Percent_Identity=23.8095238095238, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI2367365, Length=229, Percent_Identity=31.4410480349345, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1789208, Length=229, Percent_Identity=26.2008733624454, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17562906, Length=227, Percent_Identity=32.15859030837, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17562910, Length=205, Percent_Identity=29.7560975609756, Blast_Score=90, Evalue=9e-19, Organism=Caenorhabditis elegans, GI17562908, Length=210, Percent_Identity=33.8095238095238, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17531453, Length=250, Percent_Identity=29.2, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17560676, Length=240, Percent_Identity=28.3333333333333, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538480, Length=255, Percent_Identity=28.2352941176471, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI193204405, Length=197, Percent_Identity=31.9796954314721, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17551412, Length=205, Percent_Identity=31.219512195122, Blast_Score=83, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560220, Length=200, Percent_Identity=30.5, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538486, Length=254, Percent_Identity=27.9527559055118, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17544670, Length=253, Percent_Identity=28.4584980237154, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71994604, Length=203, Percent_Identity=30.0492610837438, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17562904, Length=208, Percent_Identity=29.8076923076923, Blast_Score=79, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17561402, Length=246, Percent_Identity=25.609756097561, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71994600, Length=249, Percent_Identity=29.3172690763052, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=29.0816326530612, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17560150, Length=252, Percent_Identity=28.5714285714286, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17559104, Length=202, Percent_Identity=30.1980198019802, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17563726, Length=242, Percent_Identity=28.9256198347107, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17562990, Length=244, Percent_Identity=27.8688524590164, Blast_Score=72, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17555612, Length=266, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17536025, Length=187, Percent_Identity=30.4812834224599, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17565030, Length=187, Percent_Identity=27.807486631016, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17568967, Length=243, Percent_Identity=24.6913580246914, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17564282, Length=140, Percent_Identity=30, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI17536651, Length=186, Percent_Identity=26.8817204301075, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI115534694, Length=240, Percent_Identity=29.5833333333333, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17508895, Length=194, Percent_Identity=25.7731958762887, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI72000259, Length=194, Percent_Identity=29.3814432989691, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17538182, Length=236, Percent_Identity=26.271186440678, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71982365, Length=132, Percent_Identity=31.0606060606061, Blast_Score=64, Evalue=5e-11, Organism=Saccharomyces cerevisiae, GI6322227, Length=202, Percent_Identity=32.6732673267327, Blast_Score=79, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6323882, Length=193, Percent_Identity=30.5699481865285, Blast_Score=74, Evalue=3e-14, Organism=Saccharomyces cerevisiae, GI6322067, Length=210, Percent_Identity=30.4761904761905, Blast_Score=71, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322861, Length=212, Percent_Identity=27.8301886792453, Blast_Score=70, Evalue=4e-13, Organism=Saccharomyces cerevisiae, GI6322226, Length=203, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=1e-12, Organism=Drosophila melanogaster, GI21357041, Length=240, Percent_Identity=33.3333333333333, Blast_Score=98, Evalue=4e-21, Organism=Drosophila melanogaster, GI24644339, Length=242, Percent_Identity=31.8181818181818, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=31.1740890688259, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI28571526, Length=238, Percent_Identity=31.9327731092437, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI21358495, Length=202, Percent_Identity=28.2178217821782, Blast_Score=84, Evalue=7e-17, Organism=Drosophila melanogaster, GI24643142, Length=213, Percent_Identity=33.8028169014084, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24648944, Length=244, Percent_Identity=29.5081967213115, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI21355319, Length=188, Percent_Identity=25.531914893617, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI17737361, Length=213, Percent_Identity=30.0469483568075, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI21357673, Length=245, Percent_Identity=26.9387755102041, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24641232, Length=245, Percent_Identity=26.9387755102041, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI116007236, Length=240, Percent_Identity=26.25, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26123; Mature: 25991
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIDLKGRIALVTGASRGIGYFTALELAKAGAHVIACARTVGGLEELDDAIKAVGGTATL CEEECCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEE VPFDLADMKAIDALGANIYERWGKLDILVANAGVLGVISPVGHIEAKVFERVMNINVTAT EEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHCCCCHHH WRLIRSVEPLLLKSDAGRALILSSGVAHSCRPFWGVYATSKAAVEALARTWAAETQKSPL HHHHHCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE RINSINPGATRTAMRAQAMPGEDPATVPHPSEVAAAILPLASPDLTETGKLFLVRDKKFV EEECCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCHHC EYRQPE CCCCCC >Mature Secondary Structure TIDLKGRIALVTGASRGIGYFTALELAKAGAHVIACARTVGGLEELDDAIKAVGGTATL EEECCCCEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHCCCCEEE VPFDLADMKAIDALGANIYERWGKLDILVANAGVLGVISPVGHIEAKVFERVMNINVTAT EEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEEEECCHHHHHHHHHHHHHCCCCHHH WRLIRSVEPLLLKSDAGRALILSSGVAHSCRPFWGVYATSKAAVEALARTWAAETQKSPL HHHHHCCCCEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE RINSINPGATRTAMRAQAMPGEDPATVPHPSEVAAAILPLASPDLTETGKLFLVRDKKFV EEECCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCHHC EYRQPE CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503; 1885549 [H]