Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yjeS [H]
Identifier: 15887641
GI number: 15887641
Start: 286657
End: 287637
Strand: Reverse
Name: yjeS [H]
Synonym: Atu0292
Alternate gene names: 15887641
Gene position: 287637-286657 (Counterclockwise)
Preceding gene: 15887642
Following gene: 15887640
Centisome position: 10.12
GC content: 61.98
Gene sequence:
>981_bases ATGGCGTGGATGGAGGAAACCGAGGCGCGTCGGGCGGAGCCAAAAACGCTCTGGGGCGATGTGCGCTCCATCGTCATGTT CGGCCTCAATTACGGGCCGGACGAAGATCCGCGTGGCCTGCTTTCGAAACCAGACAAGGCAGCCATTTCGGTCTATGCCC GCAACCGCGATTACCATGACATCATCAAGGGGCGGCTGAAGGAGATCGCCACGCGCTTTGCTGCCCGCGCCGGTGAGGAT GTGAAAGTCTTCGTCGATACCGCCCCGGTGATGGAAAAGCCGCTTGCCGCCGCCGCCGGTCTCGGCTGGCAGGGCAAGCA CACCAATCTCGTCAGCCGCAGCCATGGCTCCTGGCTGTTTCTGGGCAGCATGTTCACCACCGCCGAGCTCTGTGTTGACG AGGCCGAGAGGGATCATTGCGGTTCCTGCCGCGCCTGCCTCGACGCCTGTCCCACGGCGGCTTTTCCTGCCCCCTATCAG CTGGACGCGCGCCGCTGCATCTCCTATCTCACCATTGAGCACAAGGGACCGATCCCGCACGAATTCCGGCCGATGATCGG CAACCGCATCTATGGCTGTGATGATTGCCTTGCCGCCTGTCCGTGGAACAAGTTCGCGGCCAGCGCCTCCGAGATGAAGC TGAAGGCGCGCGAAGATCTGAAGGAACCATCCATCGCCTTTCTGCTGACGCTTGACGATGCCGCCTTTCGCAGCTTTTTC AGCGGCTCCCCCGTCAAGCGCATCGGCCGCAATCGCTTCATCCGCAATGTGCTGATTGCCGCGGGAAACTCTGCCGACCG GCATTTCGTGGAACAATGCAAGGCACTTGCGGAGGCCGACCCTTCCGCGGAAGTGCGCGGCATGGCCGCATGGGCTTTGT CGCGGCTTATGGACAGGGACGAATTCCGTACATACTCTGCCGGTCGCGCACCGGAGACTGATCCGGAGGCGGAAATGGAA TGGCAACTGGCAGAGGCATGA
Upstream 100 bases:
>100_bases TTTACTCGGCTTCGATCTGTGTCGCATCACGGCGCCCGACAGCATTCCGCTTGCACCGGAGCGGCTGCGGCAGTTTCTCG AGAATGGCTACCACGGCACC
Downstream 100 bases:
>100_bases AGCATGCATGTGATGATTTTCGGCGCGGGATATTCAGGGAAAGCCATTGCCAACGCGTTGAAAACCAAGGCTGCAAGTGT CTGCGGCACCACACGCAGCG
Product: iron-sulfur cluster binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MAWMEETEARRAEPKTLWGDVRSIVMFGLNYGPDEDPRGLLSKPDKAAISVYARNRDYHDIIKGRLKEIATRFAARAGED VKVFVDTAPVMEKPLAAAAGLGWQGKHTNLVSRSHGSWLFLGSMFTTAELCVDEAERDHCGSCRACLDACPTAAFPAPYQ LDARRCISYLTIEHKGPIPHEFRPMIGNRIYGCDDCLAACPWNKFAASASEMKLKAREDLKEPSIAFLLTLDDAAFRSFF SGSPVKRIGRNRFIRNVLIAAGNSADRHFVEQCKALAEADPSAEVRGMAAWALSRLMDRDEFRTYSAGRAPETDPEAEME WQLAEA
Sequences:
>Translated_326_residues MAWMEETEARRAEPKTLWGDVRSIVMFGLNYGPDEDPRGLLSKPDKAAISVYARNRDYHDIIKGRLKEIATRFAARAGED VKVFVDTAPVMEKPLAAAAGLGWQGKHTNLVSRSHGSWLFLGSMFTTAELCVDEAERDHCGSCRACLDACPTAAFPAPYQ LDARRCISYLTIEHKGPIPHEFRPMIGNRIYGCDDCLAACPWNKFAASASEMKLKAREDLKEPSIAFLLTLDDAAFRSFF SGSPVKRIGRNRFIRNVLIAAGNSADRHFVEQCKALAEADPSAEVRGMAAWALSRLMDRDEFRTYSAGRAPETDPEAEME WQLAEA >Mature_325_residues AWMEETEARRAEPKTLWGDVRSIVMFGLNYGPDEDPRGLLSKPDKAAISVYARNRDYHDIIKGRLKEIATRFAARAGEDV KVFVDTAPVMEKPLAAAAGLGWQGKHTNLVSRSHGSWLFLGSMFTTAELCVDEAERDHCGSCRACLDACPTAAFPAPYQL DARRCISYLTIEHKGPIPHEFRPMIGNRIYGCDDCLAACPWNKFAASASEMKLKAREDLKEPSIAFLLTLDDAAFRSFFS GSPVKRIGRNRFIRNVLIAAGNSADRHFVEQCKALAEADPSAEVRGMAAWALSRLMDRDEFRTYSAGRAPETDPEAEMEW QLAEA
Specific function: Unknown
COG id: COG1600
COG function: function code C; Uncharacterized Fe-S protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 4Fe-4S ferredoxin-type domain [H]
Homologues:
Organism=Escherichia coli, GI1790608, Length=302, Percent_Identity=37.7483443708609, Blast_Score=226, Evalue=2e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004453 - InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR013542 - InterPro: IPR009051 [H]
Pfam domain/function: PF08331 DUF1730 [H]
EC number: NA
Molecular weight: Translated: 36255; Mature: 36124
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAWMEETEARRAEPKTLWGDVRSIVMFGLNYGPDEDPRGLLSKPDKAAISVYARNRDYHD CCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEEEEECCCCHHH IIKGRLKEIATRFAARAGEDVKVFVDTAPVMEKPLAAAAGLGWQGKHTNLVSRSHGSWLF HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEE LGSMFTTAELCVDEAERDHCGSCRACLDACPTAAFPAPYQLDARRCISYLTIEHKGPIPH ECHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEECCCCCCH EFRPMIGNRIYGCDDCLAACPWNKFAASASEMKLKAREDLKEPSIAFLLTLDDAAFRSFF HHHHHHCCCCCCCHHHHHHCCCHHHHCCHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHH SGSPVKRIGRNRFIRNVLIAAGNSADRHFVEQCKALAEADPSAEVRGMAAWALSRLMDRD CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH EFRTYSAGRAPETDPEAEMEWQLAEA HHHHCCCCCCCCCCCCCCCCEEECCC >Mature Secondary Structure AWMEETEARRAEPKTLWGDVRSIVMFGLNYGPDEDPRGLLSKPDKAAISVYARNRDYHD CCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHEEEEEECCCCHHH IIKGRLKEIATRFAARAGEDVKVFVDTAPVMEKPLAAAAGLGWQGKHTNLVSRSHGSWLF HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHCCCCCCEEE LGSMFTTAELCVDEAERDHCGSCRACLDACPTAAFPAPYQLDARRCISYLTIEHKGPIPH ECHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHEEECCCCCCH EFRPMIGNRIYGCDDCLAACPWNKFAASASEMKLKAREDLKEPSIAFLLTLDDAAFRSFF HHHHHHCCCCCCCHHHHHHCCCHHHHCCHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHH SGSPVKRIGRNRFIRNVLIAAGNSADRHFVEQCKALAEADPSAEVRGMAAWALSRLMDRD CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH EFRTYSAGRAPETDPEAEMEWQLAEA HHHHCCCCCCCCCCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Fe [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]