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The map label for this gene is ctpD [C]

Identifier: 15887573

GI number: 15887573

Start: 226493

End: 228076

Strand: Reverse

Name: ctpD [C]

Synonym: Atu0221

Alternate gene names: 15887573

Gene position: 228076-226493 (Counterclockwise)

Preceding gene: 15887574

Following gene: 159184217

Centisome position: 8.03

GC content: 56.82

Gene sequence:

>1584_bases
ATGACCGGGGGGCTCATGACAAAACGTTTCAAACACCATCTGCGCTCGTCGATGGCAGGCGGGCTTGCATTCTGCCTGAC
TTTTTCAGGCGTTCCCGGCCGGCATTCTCCCGATTTTCTGCGCACCAGCGAGGCGGAAGCGCAAAGCGCAAGCATCGTTC
GGATCACCGAAAGTGGCACGGGCATTCGCAAGCGCCTTAAACTCGGGCTGAACAAGGCGCTCGTCATCGACCTGCCGGAA
GATGCGCACGACATTCTCGTTGCCGACCCGAGCCTTGCCGACGCTGTGACCCGAACATCGAGACGCATCTACCTTTTCGG
GAAAATGGTGGGACAGACCAACATCTTCATTTTTGGTGATGGTGGTCGGGAAATCGTCAGCCTCGATCTCGAGGTTGAGC
GCGACATTTCGGGGCTGGAGGCGAATATCCGCCGCTTTATTCCCGAGTCGGACATCAAGGTGGAAATCGTCTCGGACAAC
ATCGTTCTCACGGGATCGGTGCGCACGCCGCAGGATTCCGCACGCGCGGTGCAACTTGCCGACGCCTTTCTGAAGGGCGG
CGAGGCCACCACACGCAACATATCGCTCACGGGCGGCAACAATGGCGGCGATGCGGCAATTTTTGCCGAGCGCCGACAGG
TATCGCAAATCGTCAACATGCTGACGATTGAAGGCGAAGATCAGGTGACGCTGAAAGTCACTGTTGCGGAAGTCAGCAGG
CAGGTTTTGAAACAGCTCGGTTTCAACGGCTCGATCAGCAGCTCGACAAGCGGCAATGGGTTCGAATTTGCAAATCCGTC
TAATCTTGGCAATGCGATCGATGGCGCGTCGAGGATTGCAAGCGGCGCAATTGGCTCGGGCTCCCTCAGATTTGCTTCTT
ATCTCAATGCCATGGAGCAGGCTGGCGTCATGCGCACATTGGCGGAGCCGAGCCTGACTGCTATTTCCGGAGAGCAGGCG
AAGTTCTATGTCGGAGGTGATTTCAGGCTTGCCGCAGAGCAGGAAGTCGACATCGACAAGGAAACCGGACGGCCGACGAT
TACACGAACGACCAATACAGTCGACTATGGCATCACTTTGAACTTCAAGCCTGTCGTGCTTTCACCCGGCCGCATCAGTC
TCAAGATTGAGACCAATGTTTCCGAGCCTACCTATGAAGGCAACGTTGTAACCGGAAATGGGGGTCGAACGATCCCCGGC
TCGACCTACATGTCGGTGCGCAAGCGCGAGACCTCCACAACGGTTGAGCTTCCCTCCGGCGGATCGATCGTGATTGCGGG
TCTTGTCCAGGATAATGTGCGGCAGGCGATGTCCGGGCTTCCCGGCATGTCAAAAATCCCGATCTTTGGCACGCTTTTCC
GCAGCAAGGAGTTCCTGCGCAACGAAACGGAACTTGTCATCATCGCGACGCCCTATCTGGTGCGTCCCGTTGCCCGCAAC
CAGATCGCCCGGCCGGATGACAACTTCAACCCGGAAAACGATGCGGCGATGTATTTCATGAACCGCGTCAACAAGGTCTA
TGGCCGCAAGGATCAGGTTCAGGCGGCTCCCTATCAGGGATCAGTGGGGTTCATCTACAAATGA

Upstream 100 bases:

>100_bases
CGCTTTCGGCCGGCCATCTTCTCAGCGGAAGTTCCGGCCAGCCGGAAATTCAGGTGATCAAATCCGGCTCGATCGTGAAG
AGCGGTCAAGGAGCCTCACA

Downstream 100 bases:

>100_bases
CGACGCGCGCACCCAGTTCCCTCTCCACAGCGAGCCCGATCCGGGCAGGAAACGTCATGCAGGAAAACTCTTCCACCTTT
TCCCTCCAGCTGCCCGGAAG

Product: component of type IV pilus

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 527; Mature: 526

Protein sequence:

>527_residues
MTGGLMTKRFKHHLRSSMAGGLAFCLTFSGVPGRHSPDFLRTSEAEAQSASIVRITESGTGIRKRLKLGLNKALVIDLPE
DAHDILVADPSLADAVTRTSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVEIVSDN
IVLTGSVRTPQDSARAVQLADAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVSQIVNMLTIEGEDQVTLKVTVAEVSR
QVLKQLGFNGSISSSTSGNGFEFANPSNLGNAIDGASRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQA
KFYVGGDFRLAAEQEVDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGNGGRTIPG
STYMSVRKRETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLFRSKEFLRNETELVIIATPYLVRPVARN
QIARPDDNFNPENDAAMYFMNRVNKVYGRKDQVQAAPYQGSVGFIYK

Sequences:

>Translated_527_residues
MTGGLMTKRFKHHLRSSMAGGLAFCLTFSGVPGRHSPDFLRTSEAEAQSASIVRITESGTGIRKRLKLGLNKALVIDLPE
DAHDILVADPSLADAVTRTSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVEIVSDN
IVLTGSVRTPQDSARAVQLADAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVSQIVNMLTIEGEDQVTLKVTVAEVSR
QVLKQLGFNGSISSSTSGNGFEFANPSNLGNAIDGASRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQA
KFYVGGDFRLAAEQEVDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGNGGRTIPG
STYMSVRKRETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLFRSKEFLRNETELVIIATPYLVRPVARN
QIARPDDNFNPENDAAMYFMNRVNKVYGRKDQVQAAPYQGSVGFIYK
>Mature_526_residues
TGGLMTKRFKHHLRSSMAGGLAFCLTFSGVPGRHSPDFLRTSEAEAQSASIVRITESGTGIRKRLKLGLNKALVIDLPED
AHDILVADPSLADAVTRTSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVEIVSDNI
VLTGSVRTPQDSARAVQLADAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVSQIVNMLTIEGEDQVTLKVTVAEVSRQ
VLKQLGFNGSISSSTSGNGFEFANPSNLGNAIDGASRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAK
FYVGGDFRLAAEQEVDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGNGGRTIPGS
TYMSVRKRETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLFRSKEFLRNETELVIIATPYLVRPVARNQ
IARPDDNFNPENDAAMYFMNRVNKVYGRKDQVQAAPYQGSVGFIYK

Specific function: Involved in the secretion of an unknown compound (Potential) [H]

COG id: COG4964

COG function: function code U; Flp pilus assembly protein, secretin CpaC

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 BON domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001775
- InterPro:   IPR004846
- InterPro:   IPR007055 [H]

Pfam domain/function: PF04972 BON; PF00263 Secretin [H]

EC number: NA

Molecular weight: Translated: 56803; Mature: 56672

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: PS50914 BON ; PS00875 T2SP_D

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGGLMTKRFKHHLRSSMAGGLAFCLTFSGVPGRHSPDFLRTSEAEAQSASIVRITESGT
CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHCCCCCCCCCCEEEEEECCCC
GIRKRLKLGLNKALVIDLPEDAHDILVADPSLADAVTRTSRRIYLFGKMVGQTNIFIFGD
CHHHHHHHCCCCEEEEECCCCCCEEEEECCCHHHHHHHCCCEEEEEEEEECCEEEEEEEC
GGREIVSLDLEVERDISGLEANIRRFIPESDIKVEIVSDNIVLTGSVRTPQDSARAVQLA
CCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHH
DAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVSQIVNMLTIEGEDQVTLKVTVAEVSR
HHHHCCCCCEEEEEEEECCCCCCCEEEEHHHHHHHHHHHEEEECCCCEEEEEEEHHHHHH
QVLKQLGFNGSISSSTSGNGFEFANPSNLGNAIDGASRIASGAIGSGSLRFASYLNAMEQ
HHHHHCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AGVMRTLAEPSLTAISGEQAKFYVGGDFRLAAEQEVDIDKETGRPTITRTTNTVDYGITL
HHHHHHHCCCCEEEECCCCEEEEECCCEEEECCCCCCCCCCCCCCEEEEECCEEEEEEEE
NFKPVVLSPGRISLKIETNVSEPTYEGNVVTGNGGRTIPGSTYMSVRKRETSTTVELPSG
EEEEEEECCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHEEEEECCCCCEEECCCC
GSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLFRSKEFLRNETELVIIATPYLVRPVARN
CCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHCHHHHC
QIARPDDNFNPENDAAMYFMNRVNKVYGRKDQVQAAPYQGSVGFIYK
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEC
>Mature Secondary Structure 
TGGLMTKRFKHHLRSSMAGGLAFCLTFSGVPGRHSPDFLRTSEAEAQSASIVRITESGT
CCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHCCCCCCCCCCEEEEEECCCC
GIRKRLKLGLNKALVIDLPEDAHDILVADPSLADAVTRTSRRIYLFGKMVGQTNIFIFGD
CHHHHHHHCCCCEEEEECCCCCCEEEEECCCHHHHHHHCCCEEEEEEEEECCEEEEEEEC
GGREIVSLDLEVERDISGLEANIRRFIPESDIKVEIVSDNIVLTGSVRTPQDSARAVQLA
CCCEEEEEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECCEEEEECCCCCCHHHHHHHHH
DAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVSQIVNMLTIEGEDQVTLKVTVAEVSR
HHHHCCCCCEEEEEEEECCCCCCCEEEEHHHHHHHHHHHEEEECCCCEEEEEEEHHHHHH
QVLKQLGFNGSISSSTSGNGFEFANPSNLGNAIDGASRIASGAIGSGSLRFASYLNAMEQ
HHHHHCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
AGVMRTLAEPSLTAISGEQAKFYVGGDFRLAAEQEVDIDKETGRPTITRTTNTVDYGITL
HHHHHHHCCCCEEEECCCCEEEEECCCEEEECCCCCCCCCCCCCCEEEEECCEEEEEEEE
NFKPVVLSPGRISLKIETNVSEPTYEGNVVTGNGGRTIPGSTYMSVRKRETSTTVELPSG
EEEEEEECCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCHHEEEEECCCCCEEECCCC
GSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLFRSKEFLRNETELVIIATPYLVRPVARN
CCEEEEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHHCHHHHC
QIARPDDNFNPENDAAMYFMNRVNKVYGRKDQVQAAPYQGSVGFIYK
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]