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The map label for this gene is rimP

Identifier: 15887444

GI number: 15887444

Start: 93972

End: 94568

Strand: Reverse

Name: rimP

Synonym: Atu0090

Alternate gene names: 15887444

Gene position: 94568-93972 (Counterclockwise)

Preceding gene: 15887446

Following gene: 15887443

Centisome position: 3.33

GC content: 57.12

Gene sequence:

>597_bases
ATGGCAGACACCGCACAAGAACCGCGACTGATAACCGAAACGGGCATTGACCAGCGCATTGCCGAGATCATCGAGCCTGT
TCTGACGGGCATGGGATATCTCCTGGTGCGCGTGCGGCTCTCCAACCAGAACGGCATGACGCTGCAGGTGATGGCCGAGC
GGGAAGACGGAACGATGAACGTTCAGGACTGTGAGGCCATCTCCATGGCGATTTCACCGGTTCTTGATGTGGAAGATCCG
GTCGAGAAAGCGTATCATCTCGAAGTTTCCTCGCCCGGCATCGACCGGCCGATGGTTCGTAAAACGGATTTCACCCGCTG
GCAGGGCCATCTGGTGAAGGTCGAGACCTCCATTCTGGTCGAAAACCGCAAGCGGTTTCGCGGCAAGATCGTTGAGGTCG
ATGCGGATAGTTTCAAGCTGGAACGCGATCAGATTGCCTATGGCGAAGAGCCGACGGTCGTCGTTCCGTTCAATGCGCTT
TCCGATGCGAAGCTCATTCTGACGGACGACCTTATTCGTGATGCGCTGCGGGCAGACAAGGCGGCAAAGGCCGCCGCCGC
AAACCAGAACGACGAAAACGAAGCAGACGAAGACTAA

Upstream 100 bases:

>100_bases
TTGATGAAGAGTGGGGCCGCAAGGCTCCGCTCTTTTTCGTTAGGCGAACCGGAAACCACGGGCTAAGTGCCCGGTGAAAA
TCTAAAGACCGGAAGGCCAG

Downstream 100 bases:

>100_bases
TTCCAACGTAACGCCCGGAAAACGGGCGATCCCCGCAATTATGCGACTTACGGAGATAAAAAAATGGCAGTGAGTGCTAA
CCGGCTTGAGCTTCTGCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MADTAQEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMNVQDCEAISMAISPVLDVEDP
VEKAYHLEVSSPGIDRPMVRKTDFTRWQGHLVKVETSILVENRKRFRGKIVEVDADSFKLERDQIAYGEEPTVVVPFNAL
SDAKLILTDDLIRDALRADKAAKAAAANQNDENEADED

Sequences:

>Translated_198_residues
MADTAQEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMNVQDCEAISMAISPVLDVEDP
VEKAYHLEVSSPGIDRPMVRKTDFTRWQGHLVKVETSILVENRKRFRGKIVEVDADSFKLERDQIAYGEEPTVVVPFNAL
SDAKLILTDDLIRDALRADKAAKAAAANQNDENEADED
>Mature_197_residues
ADTAQEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMNVQDCEAISMAISPVLDVEDPV
EKAYHLEVSSPGIDRPMVRKTDFTRWQGHLVKVETSILVENRKRFRGKIVEVDADSFKLERDQIAYGEEPTVVVPFNALS
DAKLILTDDLIRDALRADKAAKAAAANQNDENEADED

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=121, Percent_Identity=38.0165289256198, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_AGRT5 (Q8UJ48)

Other databases:

- EMBL:   AE007869
- PIR:   AE2587
- PIR:   E97369
- RefSeq:   NP_353125.1
- ProteinModelPortal:   Q8UJ48
- SMR:   Q8UJ48
- STRING:   Q8UJ48
- GeneID:   1132128
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0090
- eggNOG:   COG0779
- HOGENOM:   HBG668072
- OMA:   CTVQIMA
- PhylomeDB:   Q8UJ48
- ProtClustDB:   PRK00092
- BioCyc:   ATUM176299-1:ATU0090-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 22083; Mature: 21952

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADTAQEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMN
CCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEECCCCCCC
VQDCEAISMAISPVLDVEDPVEKAYHLEVSSPGIDRPMVRKTDFTRWQGHLVKVETSILV
HHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEHHHHH
ENRKRFRGKIVEVDADSFKLERDQIAYGEEPTVVVPFNALSDAKLILTDDLIRDALRADK
HHHHHHCCEEEEECCCCEEECHHHCCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHH
AAKAAAANQNDENEADED
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
ADTAQEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMN
CCCCCCCEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEECCCCCCC
VQDCEAISMAISPVLDVEDPVEKAYHLEVSSPGIDRPMVRKTDFTRWQGHLVKVETSILV
HHHHHHHHHHHHCCCCCCCHHHHEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEHHHHH
ENRKRFRGKIVEVDADSFKLERDQIAYGEEPTVVVPFNALSDAKLILTDDLIRDALRADK
HHHHHHCCEEEEECCCCEEECHHHCCCCCCCEEEEECCCCCCCEEEEEHHHHHHHHHHHH
AAKAAAANQNDENEADED
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194