Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is mltB [H]
Identifier: 15887446
GI number: 15887446
Start: 96508
End: 97773
Strand: Reverse
Name: mltB [H]
Synonym: Atu0092
Alternate gene names: 15887446
Gene position: 97773-96508 (Counterclockwise)
Preceding gene: 15887447
Following gene: 15887444
Centisome position: 3.44
GC content: 59.16
Gene sequence:
>1266_bases ATGCCACACCGATTTGCTACCAAGGCACTGGCCGCCATTCTTTCCGTTTTTTCAGCAACGACAGTTCTTGCACAGTCCGC CCCGAAAGGTGCTGCTGCCGCCAAATATGATGCAGACTTCAATGCCTGGCTGAAAAAGGAAATCTGGCCGGAGGCCCGCA AGGCCGGCATTTCCCAAGAGACGCTGGAGGCCACGCTCAGCGGTCTTTCCATCAGCTGGAACCTGCCCGATCTTGTCATT CCCGGTCAGAAACCGCCGAAGGAACAGAGCCAGAGCCAGGCGGAATTCTCCTCGCCTGGCGCTTATTTCTCCGAAAAGCG GTTACAGGGGCTTGCCGTTACCGGCCGTTCGCTTGCGGCCACGCACGCAGCGACGCTGCGCAGGATCGAGACGAAATATG GTGTTCCCGGCGATATCGTCGTTGCGATCTGGGGCCGCGAATCCGGTTTTGGTCGGGCAAAATTGCCGCATTCGGTGGTC GATGTGCTGGCCACGAAAGCCTATATGTCGACCCGCAAGGAGATGTTCCGCACCGAGCTGATCGATGCGCTGAAGATCGT CGAAAGCGGCGATATAGCGGCTTCACGCATGATGGGCTCCTGGGCCGGCGCGCTTGGCCAGCCGCAATTCATGCCGTCGA GCTATCTCAAATATGCCGTGGATTTCGATGGCGATGGCCACCGCGATATCTGGAATTCGGTGCCGGATGCACTGGCATCC ATAGCGAACTATCTTTCCCAGCGCGGCTGGCAGCGCAATCGCGACTGGGGCTTCGAAGTCTCCATCCCCGCCAATGTTTC CTGCGCGCAGGAAGGCCCTGATCTGGCCCGACCGGTGGCCGACTGGGCGAAGATGGGCATTACCCGCATTTCCGGAAAAG CCTTTCCTGTCAATGACCTGACCGCCGACGGCATGATGCTGGTGCCGGCCGGGCGCCATGGGCCGGAATTCGTGGTGACG CCGAATTTCTATGTCATCAAGGAATATAATAATTCTGACCTCTACGCGCTCTTCATTGGCAATCTCGCCGACCGCATCGC CCATGGGGCGGGACCGTTCAAGGGGGAATGGGGCAATGTCGGGTCAATGCTGCGCTCCGACGTGCTGACCATGCAGAAGG CTCTGGTCGCCAAGGGTTACGATGTCGGCAAGGCGGACGGGCTGGCGGGCTTCAAGACGCGCCGCTCACTCGGTGACTGG CAGTCGAAAAACGGCCTTGCACCGACATGTTTTCCCGATGCGACACTGAAGGCGAAGCTGAAATAA
Upstream 100 bases:
>100_bases GGTGAGCTTGATTATCTCGACGAGGGCACATTGACGGCGGCGCTTCGGGCGCGAACGACGATCTGAAGCCTTCCCTCCCC ACCATCCAAGAGGAGACCGA
Downstream 100 bases:
>100_bases TCCGTCTCCGGCCCATCGTCTTTTAATGCTGGTCGGTATGGGGCTTGTGAAAGATATCGTCGGTTGGCGGAATGGTCTGC CGTTCGATCATCCGGTGCAC
Product: lytic murein transglycosylase
Products: Muramic Acid Residue [C]
Alternate protein names: 35 kDa soluble lytic transglycosylase; Murein hydrolase B; Slt35 [H]
Number of amino acids: Translated: 421; Mature: 420
Protein sequence:
>421_residues MPHRFATKALAAILSVFSATTVLAQSAPKGAAAAKYDADFNAWLKKEIWPEARKAGISQETLEATLSGLSISWNLPDLVI PGQKPPKEQSQSQAEFSSPGAYFSEKRLQGLAVTGRSLAATHAATLRRIETKYGVPGDIVVAIWGRESGFGRAKLPHSVV DVLATKAYMSTRKEMFRTELIDALKIVESGDIAASRMMGSWAGALGQPQFMPSSYLKYAVDFDGDGHRDIWNSVPDALAS IANYLSQRGWQRNRDWGFEVSIPANVSCAQEGPDLARPVADWAKMGITRISGKAFPVNDLTADGMMLVPAGRHGPEFVVT PNFYVIKEYNNSDLYALFIGNLADRIAHGAGPFKGEWGNVGSMLRSDVLTMQKALVAKGYDVGKADGLAGFKTRRSLGDW QSKNGLAPTCFPDATLKAKLK
Sequences:
>Translated_421_residues MPHRFATKALAAILSVFSATTVLAQSAPKGAAAAKYDADFNAWLKKEIWPEARKAGISQETLEATLSGLSISWNLPDLVI PGQKPPKEQSQSQAEFSSPGAYFSEKRLQGLAVTGRSLAATHAATLRRIETKYGVPGDIVVAIWGRESGFGRAKLPHSVV DVLATKAYMSTRKEMFRTELIDALKIVESGDIAASRMMGSWAGALGQPQFMPSSYLKYAVDFDGDGHRDIWNSVPDALAS IANYLSQRGWQRNRDWGFEVSIPANVSCAQEGPDLARPVADWAKMGITRISGKAFPVNDLTADGMMLVPAGRHGPEFVVT PNFYVIKEYNNSDLYALFIGNLADRIAHGAGPFKGEWGNVGSMLRSDVLTMQKALVAKGYDVGKADGLAGFKTRRSLGDW QSKNGLAPTCFPDATLKAKLK >Mature_420_residues PHRFATKALAAILSVFSATTVLAQSAPKGAAAAKYDADFNAWLKKEIWPEARKAGISQETLEATLSGLSISWNLPDLVIP GQKPPKEQSQSQAEFSSPGAYFSEKRLQGLAVTGRSLAATHAATLRRIETKYGVPGDIVVAIWGRESGFGRAKLPHSVVD VLATKAYMSTRKEMFRTELIDALKIVESGDIAASRMMGSWAGALGQPQFMPSSYLKYAVDFDGDGHRDIWNSVPDALASI ANYLSQRGWQRNRDWGFEVSIPANVSCAQEGPDLARPVADWAKMGITRISGKAFPVNDLTADGMMLVPAGRHGPEFVVTP NFYVIKEYNNSDLYALFIGNLADRIAHGAGPFKGEWGNVGSMLRSDVLTMQKALVAKGYDVGKADGLAGFKTRRSLGDWQ SKNGLAPTCFPDATLKAKLK
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG2951
COG function: function code M; Membrane-bound lytic murein transglycosylase B
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789053, Length=227, Percent_Identity=34.3612334801762, Blast_Score=113, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011757 [H]
Pfam domain/function: NA
EC number: 3.2.1.- [C]
Molecular weight: Translated: 45574; Mature: 45443
Theoretical pI: Translated: 9.70; Mature: 9.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHRFATKALAAILSVFSATTVLAQSAPKGAAAAKYDADFNAWLKKEIWPEARKAGISQE CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCHHHHHCCCCHH TLEATLSGLSISWNLPDLVIPGQKPPKEQSQSQAEFSSPGAYFSEKRLQGLAVTGRSLAA HHHHHHHCCEEEECCCCEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHCCEEECCCHHHH THAATLRRIETKYGVPGDIVVAIWGRESGFGRAKLPHSVVDVLATKAYMSTRKEMFRTEL HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IDALKIVESGDIAASRMMGSWAGALGQPQFMPSSYLKYAVDFDGDGHRDIWNSVPDALAS HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHEEEEECCCCCCHHHHHHHHHHHHH IANYLSQRGWQRNRDWGFEVSIPANVSCAQEGPDLARPVADWAKMGITRISGKAFPVNDL HHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCHHEECCCCCCCCCC TADGMMLVPAGRHGPEFVVTPNFYVIKEYNNSDLYALFIGNLADRIAHGAGPFKGEWGNV CCCCEEEEECCCCCCEEEECCCEEEEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCH GSMLRSDVLTMQKALVAKGYDVGKADGLAGFKTRRSLGDWQSKNGLAPTCFPDATLKAKL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCEEECC K C >Mature Secondary Structure PHRFATKALAAILSVFSATTVLAQSAPKGAAAAKYDADFNAWLKKEIWPEARKAGISQE CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHHCCHHHHHCCCCHH TLEATLSGLSISWNLPDLVIPGQKPPKEQSQSQAEFSSPGAYFSEKRLQGLAVTGRSLAA HHHHHHHCCEEEECCCCEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHCCEEECCCHHHH THAATLRRIETKYGVPGDIVVAIWGRESGFGRAKLPHSVVDVLATKAYMSTRKEMFRTEL HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH IDALKIVESGDIAASRMMGSWAGALGQPQFMPSSYLKYAVDFDGDGHRDIWNSVPDALAS HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCHHEEEEECCCCCCHHHHHHHHHHHHH IANYLSQRGWQRNRDWGFEVSIPANVSCAQEGPDLARPVADWAKMGITRISGKAFPVNDL HHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCHHEECCCCCCCCCC TADGMMLVPAGRHGPEFVVTPNFYVIKEYNNSDLYALFIGNLADRIAHGAGPFKGEWGNV CCCCEEEEECCCCCCEEEECCCEEEEEECCCCCEEEEEHHHHHHHHHCCCCCCCCCCCCH GSMLRSDVLTMQKALVAKGYDVGKADGLAGFKTRRSLGDWQSKNGLAPTCFPDATLKAKL HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCHHCCCCCCCCCCCCCCEEECC K C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
General reaction: Cleavage Bond [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7476170; 7789526; 9205837; 9278503; 3553176; 9761817; 10570954; 10545329; 10684641 [H]