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The map label for this gene is yecS [H]

Identifier: 158423461

GI number: 158423461

Start: 2102577

End: 2103335

Strand: Direct

Name: yecS [H]

Synonym: AZC_1837

Alternate gene names: 158423461

Gene position: 2102577-2103335 (Clockwise)

Preceding gene: 158423460

Following gene: 158423462

Centisome position: 39.16

GC content: 62.85

Gene sequence:

>759_bases
ATGGATCTCGTCGCGGAGTGGTTCCGCAACCTCTACGACACGACCGGCATCAACCTGACCATCGTCTATGATGCCTACGA
CCGGCAGCGCTTCGTGTCCGGCGTCGGCATGACGATCTATCTGTCGGTGGTGTCGATCCTCATCTCCATCGTCATCGGTG
CCATCGGCGCCTGGGCGCAGGGCTCGCCCGTGCGCGCCATCCGCGCGCTGGTGAACGGCTTCGTCGTCCTGTTCCGCAAC
ACCCCGCCGCTGGTGCAGATCTTCTTCTTCTACTTCGGTCTCGGGCAGATCCTGCCGCGGGTGGAGAATGACGACGGCAT
GATGGTGCAGATGATCTCCAACGTGCAGTGGGCGATCATCTCTCTGTCCCTGTTCGCGGGGGCCTATAACGTCGAGATCT
TCCGCTCCGGCCTTGAGGCCGTGCCGCGCACCACGTCGGAGGCCGCCGAGGCGCTGGGCTATACGCGCATCGGCGTCTAT
CGCCACGTGCTGCTGCCGCTCGCTTTGCGCATCTGCCTGCCGGCGCTGAACAACAATCTCGTCAATCTGCTCAAGACCAC
CACGCTCGCTTATGCCATCGCCGTGCCGGAGACGCTCTATGTCTCCAAGCAGATCTGGAACGACAGCCAGAACGTGCCGG
TGATGATGGTGGTTCTGCTGCTGGTCTACACCGGCCTCGTGGGCATCCTCGTCTACATCATGCATCGCTGGGAGCGGGCA
CTCGCCATTCCCGGCTATGGCCAGGGAGCGGCCTCATGA

Upstream 100 bases:

>100_bases
AGCGGGTTTCCTGATGGTGAAAAATGTGTCAGGGGCCAAGCCTGCGGCAGGCTCCGGCCACCCGCCGCTCTCCCTCCTTC
CCTGATCGACGGGCTGATCC

Downstream 100 bases:

>100_bases
GCGGCGCGCCGTCCTCCACCGGCACCCTGCCGGCCAGCCCTCTTCCCGTCCTGCTACCGTTCCGGCTCGGCGAACGCCGG
CGGCGCTTTCCGCCATGGCG

Product: polar amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MDLVAEWFRNLYDTTGINLTIVYDAYDRQRFVSGVGMTIYLSVVSILISIVIGAIGAWAQGSPVRAIRALVNGFVVLFRN
TPPLVQIFFFYFGLGQILPRVENDDGMMVQMISNVQWAIISLSLFAGAYNVEIFRSGLEAVPRTTSEAAEALGYTRIGVY
RHVLLPLALRICLPALNNNLVNLLKTTTLAYAIAVPETLYVSKQIWNDSQNVPVMMVVLLLVYTGLVGILVYIMHRWERA
LAIPGYGQGAAS

Sequences:

>Translated_252_residues
MDLVAEWFRNLYDTTGINLTIVYDAYDRQRFVSGVGMTIYLSVVSILISIVIGAIGAWAQGSPVRAIRALVNGFVVLFRN
TPPLVQIFFFYFGLGQILPRVENDDGMMVQMISNVQWAIISLSLFAGAYNVEIFRSGLEAVPRTTSEAAEALGYTRIGVY
RHVLLPLALRICLPALNNNLVNLLKTTTLAYAIAVPETLYVSKQIWNDSQNVPVMMVVLLLVYTGLVGILVYIMHRWERA
LAIPGYGQGAAS
>Mature_252_residues
MDLVAEWFRNLYDTTGINLTIVYDAYDRQRFVSGVGMTIYLSVVSILISIVIGAIGAWAQGSPVRAIRALVNGFVVLFRN
TPPLVQIFFFYFGLGQILPRVENDDGMMVQMISNVQWAIISLSLFAGAYNVEIFRSGLEAVPRTTSEAAEALGYTRIGVY
RHVLLPLALRICLPALNNNLVNLLKTTTLAYAIAVPETLYVSKQIWNDSQNVPVMMVVLLLVYTGLVGILVYIMHRWERA
LAIPGYGQGAAS

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=210, Percent_Identity=30.4761904761905, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1788645, Length=179, Percent_Identity=33.5195530726257, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1788646, Length=211, Percent_Identity=30.8056872037915, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786874, Length=218, Percent_Identity=28.4403669724771, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787086, Length=215, Percent_Identity=27.906976744186, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1787030, Length=214, Percent_Identity=30.8411214953271, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787087, Length=219, Percent_Identity=26.9406392694064, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786873, Length=171, Percent_Identity=27.4853801169591, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI48994930, Length=98, Percent_Identity=36.734693877551, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 27896; Mature: 27896

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLVAEWFRNLYDTTGINLTIVYDAYDRQRFVSGVGMTIYLSVVSILISIVIGAIGAWAQ
CCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
GSPVRAIRALVNGFVVLFRNTPPLVQIFFFYFGLGQILPRVENDDGMMVQMISNVQWAII
CCHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHH
SLSLFAGAYNVEIFRSGLEAVPRTTSEAAEALGYTRIGVYRHVLLPLALRICLPALNNNL
HHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHH
VNLLKTTTLAYAIAVPETLYVSKQIWNDSQNVPVMMVVLLLVYTGLVGILVYIMHRWERA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAIPGYGQGAAS
EECCCCCCCCCC
>Mature Secondary Structure
MDLVAEWFRNLYDTTGINLTIVYDAYDRQRFVSGVGMTIYLSVVSILISIVIGAIGAWAQ
CCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC
GSPVRAIRALVNGFVVLFRNTPPLVQIFFFYFGLGQILPRVENDDGMMVQMISNVQWAII
CCHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHH
SLSLFAGAYNVEIFRSGLEAVPRTTSEAAEALGYTRIGVYRHVLLPLALRICLPALNNNL
HHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHH
VNLLKTTTLAYAIAVPETLYVSKQIWNDSQNVPVMMVVLLLVYTGLVGILVYIMHRWERA
HHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAIPGYGQGAAS
EECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]