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The map label for this gene is yckA [H]

Identifier: 158423462

GI number: 158423462

Start: 2103332

End: 2104204

Strand: Direct

Name: yckA [H]

Synonym: AZC_1838

Alternate gene names: 158423462

Gene position: 2103332-2104204 (Clockwise)

Preceding gene: 158423461

Following gene: 158423463

Centisome position: 39.17

GC content: 67.01

Gene sequence:

>873_bases
ATGAGCGGCGCGCCGTCCTCCACCGGCACCCTGCCGGCCAGCCCTCTTCCCGTCCTGCTACCGTTCCGGCTCGGCGAACG
CCGGCGGCGCTTTCCGCCATGGCGGATCACTTTGCTCCATGCGGTCGGCATCGTCGGCATCGGCCTCGTTGTCGCCGGCG
GCGCCCATGCGCAGGGCGCACCGGGCCAGCTTTCCGCCTTCGGGGTGATCTGGAAGTGGTTCCCGCTGCTCATGTGGGGC
TTCGGGTTCAACATCCTGATCTCGGTGCTGTCCATGGCGCTGGGCACGGTGGCGGGTCTCGGCCTCGGCCTTGCCGCCAT
CAGCCAGTCGGCGCCGCTGCGCCAGACGGCGTGGGGCGCGACGCAGTTCTTCCGCAACGCGCCGTGGCTGGTGCTGCTGT
TCTTCGCCATGTTCATGATCCCGTTCCAGTTCACCATCCTGGGCAAGACCATCCCCTTCCCGGACTGGGTGAAGGCGGTG
ATCGGCTTTGCTTTGCCGGTGATGGCGAACATGGCGGAGATCGTGCGCGGCGCCGTGAAGTCGCTGCCGAGCGGGCAGTG
GGAGGCGGCGGAATCGCTCGCCTTCTCCCGCCGCCAGACGCTGTGGATGATCATCCTGCCGCAGTGCGTGAAGCGCATGC
TGCCGCCGTGGATGAACCTCTACACCCTGGTCACCATGGCGACCGTGCAGGCCTCCATCGTGGGCGTCACGGAAATGCTC
ACCCTCATCGCGCAGGTGCATGCGGCCGAGGGCGGCCGGCCGGACCTGCTGGCGCCGCTCTACGGCTTCGCCATGCTCTG
CTTCTTTGTCTACTGCTACCCCATCGAGCGCTTCACGCTTTACCTTGAGCGGCGCTTCCAACTTCACCAATGA

Upstream 100 bases:

>100_bases
TGCTGCTGGTCTACACCGGCCTCGTGGGCATCCTCGTCTACATCATGCATCGCTGGGAGCGGGCACTCGCCATTCCCGGC
TATGGCCAGGGAGCGGCCTC

Downstream 100 bases:

>100_bases
TTGCCGTGCCGGAGACGCGCCTTGGCCGCCCCCACTTCCACTCCTGAGAATGAATTCGGCTGGACCCCGGACCAGCCGCT
CGTCCGCGTGGTGGACGTGC

Product: polar amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSGAPSSTGTLPASPLPVLLPFRLGERRRRFPPWRITLLHAVGIVGIGLVVAGGAHAQGAPGQLSAFGVIWKWFPLLMWG
FGFNILISVLSMALGTVAGLGLGLAAISQSAPLRQTAWGATQFFRNAPWLVLLFFAMFMIPFQFTILGKTIPFPDWVKAV
IGFALPVMANMAEIVRGAVKSLPSGQWEAAESLAFSRRQTLWMIILPQCVKRMLPPWMNLYTLVTMATVQASIVGVTEML
TLIAQVHAAEGGRPDLLAPLYGFAMLCFFVYCYPIERFTLYLERRFQLHQ

Sequences:

>Translated_290_residues
MSGAPSSTGTLPASPLPVLLPFRLGERRRRFPPWRITLLHAVGIVGIGLVVAGGAHAQGAPGQLSAFGVIWKWFPLLMWG
FGFNILISVLSMALGTVAGLGLGLAAISQSAPLRQTAWGATQFFRNAPWLVLLFFAMFMIPFQFTILGKTIPFPDWVKAV
IGFALPVMANMAEIVRGAVKSLPSGQWEAAESLAFSRRQTLWMIILPQCVKRMLPPWMNLYTLVTMATVQASIVGVTEML
TLIAQVHAAEGGRPDLLAPLYGFAMLCFFVYCYPIERFTLYLERRFQLHQ
>Mature_289_residues
SGAPSSTGTLPASPLPVLLPFRLGERRRRFPPWRITLLHAVGIVGIGLVVAGGAHAQGAPGQLSAFGVIWKWFPLLMWGF
GFNILISVLSMALGTVAGLGLGLAAISQSAPLRQTAWGATQFFRNAPWLVLLFFAMFMIPFQFTILGKTIPFPDWVKAVI
GFALPVMANMAEIVRGAVKSLPSGQWEAAESLAFSRRQTLWMIILPQCVKRMLPPWMNLYTLVTMATVQASIVGVTEMLT
LIAQVHAAEGGRPDLLAPLYGFAMLCFFVYCYPIERFTLYLERRFQLHQ

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=273, Percent_Identity=27.4725274725275, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787030, Length=219, Percent_Identity=30.5936073059361, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788226, Length=166, Percent_Identity=33.7349397590361, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786873, Length=214, Percent_Identity=24.2990654205607, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31925; Mature: 31793

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: PS00639 THIOL_PROTEASE_HIS ; PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGAPSSTGTLPASPLPVLLPFRLGERRRRFPPWRITLLHAVGIVGIGLVVAGGAHAQGA
CCCCCCCCCCCCCCCCCEEECCHHCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PGQLSAFGVIWKWFPLLMWGFGFNILISVLSMALGTVAGLGLGLAAISQSAPLRQTAWGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
TQFFRNAPWLVLLFFAMFMIPFQFTILGKTIPFPDWVKAVIGFALPVMANMAEIVRGAVK
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLPSGQWEAAESLAFSRRQTLWMIILPQCVKRMLPPWMNLYTLVTMATVQASIVGVTEML
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
TLIAQVHAAEGGRPDLLAPLYGFAMLCFFVYCYPIERFTLYLERRFQLHQ
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGAPSSTGTLPASPLPVLLPFRLGERRRRFPPWRITLLHAVGIVGIGLVVAGGAHAQGA
CCCCCCCCCCCCCCCCEEECCHHCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
PGQLSAFGVIWKWFPLLMWGFGFNILISVLSMALGTVAGLGLGLAAISQSAPLRQTAWGA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
TQFFRNAPWLVLLFFAMFMIPFQFTILGKTIPFPDWVKAVIGFALPVMANMAEIVRGAVK
HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLPSGQWEAAESLAFSRRQTLWMIILPQCVKRMLPPWMNLYTLVTMATVQASIVGVTEML
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
TLIAQVHAAEGGRPDLLAPLYGFAMLCFFVYCYPIERFTLYLERRFQLHQ
HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]