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The map label for this gene is yliC [C]

Identifier: 158423177

GI number: 158423177

Start: 1765828

End: 1766781

Strand: Reverse

Name: yliC [C]

Synonym: AZC_1553

Alternate gene names: 158423177

Gene position: 1766781-1765828 (Counterclockwise)

Preceding gene: 158423178

Following gene: 158423176

Centisome position: 32.9

GC content: 66.25

Gene sequence:

>954_bases
TTGCTCGCTTATATTGCCCGCCGGATCATCTATGTGATCCCCATCGTGCTCAGCGTCGCGCTGGTGTGCTTCCTCCTGGT
GCACATCACCCCCGGCGATCCGCTGGTGGCCATCCTGCCCGCCGATGCCTCGCAGGAGCTCGCCGCCCAGCTGCGGGCCG
CCTATGGCTTCGACCGGCCGCTGCCGGTGCAGTTCGGCCTCTGGGTCTGGAAGGCGCTGCATGGCGATCTCGGCACCTCC
ATCGCCACCGGCCGCCCGGTCTTTTCCGAGGTGATGCGGGCGGTGCAGAACACCTTCATCCTCGCCTGCGCCGCGTCGCT
TATCGGCTTCACGCTCGGCGTCTTCTTCGGCCTCGTGGCCGGCTATTTCCGCGACACCTGGCTGGACAAGCTCGCTACCT
CCATCGCGGTGGCCGGCGTCTCCGTGCCCCATTACTGGCTGGGCATGGTGATGGTCATCATCTTCTCGGTCACGCTCGGG
TGGCTGCCGGCGGTGGGCGCCGGGCCCGGCGGCTCCAGCGAATGGCATTGGGACTGGGCGCATATCCAGTTCCTCATCCT
GCCCGCCGTCACCATGTCGGTGATCCCCATGGGGATCGTCACGCGCACCATCCGCGCCCTCACCGGCGACATCCTGAGCC
AGGACTTTGTTGAAGCGCTGCGCTCCAAGGGCCTTCGGGAAACCCGCGTCTTCCGCCATGTGGTGAAGAATGCCGCGCCC
ACCGCCATCGCCGTGATGGGCCTCCAGCTCGGCTATCTGCTCGGCGGCTCCATCCTCATCGAGACGGTGTTCTCGTGGCC
CGGCACGGGCTTCCTGCTCAACTCGGCCATCTTCCAGCGCGACCTGCCGCTCCTTCAGGGCACCATTCTCGTGCTGGCGC
TGTTCTTCGTCTTCCTCAACCTCGTGGTCGATATCGCCCAGGCGTCCATCGATCCGCGCATCAAGCGGGCCTGA

Upstream 100 bases:

>100_bases
CCTCTCGCAGCACTGGAGGGCGCGCCCTCCCCTCCCCCGCACGCGGGTGAGGCCCAGCCGGGGAACCGGCCGTCACAGTC
CAACCGCCCAGGGTGGTCTC

Downstream 100 bases:

>100_bases
CATGACCGCAACGGACACCGCGCTTCAGGCCGCGCCGGCGCAGAAGGCGCGCGGCTATTGGGCGACCGTCGGCCGCCGCC
TCACGCGGGACAAGGTGAGC

Product: oligopeptide ABC transporter permease component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MLAYIARRIIYVIPIVLSVALVCFLLVHITPGDPLVAILPADASQELAAQLRAAYGFDRPLPVQFGLWVWKALHGDLGTS
IATGRPVFSEVMRAVQNTFILACAASLIGFTLGVFFGLVAGYFRDTWLDKLATSIAVAGVSVPHYWLGMVMVIIFSVTLG
WLPAVGAGPGGSSEWHWDWAHIQFLILPAVTMSVIPMGIVTRTIRALTGDILSQDFVEALRSKGLRETRVFRHVVKNAAP
TAIAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVFLNLVVDIAQASIDPRIKRA

Sequences:

>Translated_317_residues
MLAYIARRIIYVIPIVLSVALVCFLLVHITPGDPLVAILPADASQELAAQLRAAYGFDRPLPVQFGLWVWKALHGDLGTS
IATGRPVFSEVMRAVQNTFILACAASLIGFTLGVFFGLVAGYFRDTWLDKLATSIAVAGVSVPHYWLGMVMVIIFSVTLG
WLPAVGAGPGGSSEWHWDWAHIQFLILPAVTMSVIPMGIVTRTIRALTGDILSQDFVEALRSKGLRETRVFRHVVKNAAP
TAIAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVFLNLVVDIAQASIDPRIKRA
>Mature_317_residues
MLAYIARRIIYVIPIVLSVALVCFLLVHITPGDPLVAILPADASQELAAQLRAAYGFDRPLPVQFGLWVWKALHGDLGTS
IATGRPVFSEVMRAVQNTFILACAASLIGFTLGVFFGLVAGYFRDTWLDKLATSIAVAGVSVPHYWLGMVMVIIFSVTLG
WLPAVGAGPGGSSEWHWDWAHIQFLILPAVTMSVIPMGIVTRTIRALTGDILSQDFVEALRSKGLRETRVFRHVVKNAAP
TAIAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVFLNLVVDIAQASIDPRIKRA

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=316, Percent_Identity=38.2911392405063, Blast_Score=224, Evalue=7e-60,
Organism=Escherichia coli, GI1789888, Length=320, Percent_Identity=38.75, Blast_Score=218, Evalue=4e-58,
Organism=Escherichia coli, GI1789965, Length=339, Percent_Identity=34.2182890855457, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1787761, Length=335, Percent_Identity=35.2238805970149, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787497, Length=320, Percent_Identity=30.625, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787550, Length=335, Percent_Identity=31.9402985074627, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788504, Length=360, Percent_Identity=22.5, Blast_Score=98, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34424; Mature: 34424

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAYIARRIIYVIPIVLSVALVCFLLVHITPGDPLVAILPADASQELAAQLRAAYGFDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCC
LPVQFGLWVWKALHGDLGTSIATGRPVFSEVMRAVQNTFILACAASLIGFTLGVFFGLVA
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYFRDTWLDKLATSIAVAGVSVPHYWLGMVMVIIFSVTLGWLPAVGAGPGGSSEWHWDWA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
HIQFLILPAVTMSVIPMGIVTRTIRALTGDILSQDFVEALRSKGLRETRVFRHVVKNAAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
TAIAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVFLN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LVVDIAQASIDPRIKRA
HHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLAYIARRIIYVIPIVLSVALVCFLLVHITPGDPLVAILPADASQELAAQLRAAYGFDRP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCC
LPVQFGLWVWKALHGDLGTSIATGRPVFSEVMRAVQNTFILACAASLIGFTLGVFFGLVA
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYFRDTWLDKLATSIAVAGVSVPHYWLGMVMVIIFSVTLGWLPAVGAGPGGSSEWHWDWA
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
HIQFLILPAVTMSVIPMGIVTRTIRALTGDILSQDFVEALRSKGLRETRVFRHVVKNAAP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCC
TAIAVMGLQLGYLLGGSILIETVFSWPGTGFLLNSAIFQRDLPLLQGTILVLALFFVFLN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LVVDIAQASIDPRIKRA
HHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]