Definition | Azorhizobium caulinodans ORS 571, complete genome. |
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Accession | NC_009937 |
Length | 5,369,772 |
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The map label for this gene is gsiD [H]
Identifier: 158423176
GI number: 158423176
Start: 1764942
End: 1765826
Strand: Reverse
Name: gsiD [H]
Synonym: AZC_1552
Alternate gene names: 158423176
Gene position: 1765826-1764942 (Counterclockwise)
Preceding gene: 158423177
Following gene: 158423175
Centisome position: 32.88
GC content: 67.68
Gene sequence:
>885_bases ATGACCGCAACGGACACCGCGCTTCAGGCCGCGCCGGCGCAGAAGGCGCGCGGCTATTGGGCGACCGTCGGCCGCCGCCT CACGCGGGACAAGGTGAGCATGGTCTGCGCCCTGATCCTGCTCGCCATCCTGCTGGCCGCGCTCCTCGCGCCTTATCTGC ACCTCGCCGATCCCTATCAGGGCTCCATGGTGCGCCGGCTGCGCCACATCGGCACGCCGGGCTATCCGCTGGGCACCGAC GAACTCGGCCGCGACATGCTCTCGCGCCTCATCTATGGCGGGCGCCTGTCGCTGCTCATCGGCATCCTGCCGGTGGTGCT GGCCTTCATCATCGGCACCAGCCTCGGCCTCGTGGCCGGCTATGCGGGTGGCTGGCTCAACACCGCCATCATGCGCACGG TGGACGTGTTCTACGCCTTCCCCTCCGTGCTGCTGGCCATCGCCATCTCGGGCGTGCTGGGGGCGGGCATCGTCAATTCC ATCGTCTCGCTCACGGTGGTGTTCGTGCCGCAGATCACCCGCGTGGCGGAGAGCGTGACCACCGGCGTGCGCAATCTCGA TTTCGTGGATGCCGCCCGTGCCTCGGGGGCCGGCGCCCTCACCATCATGCGCGTGCACATGCTGGGCAACGTGCTCGGCC CGATCTTCGTCTATTCGACCGGCCTGATCTCGGTGTCGATGATCCTGGCCGCCGGCCTCTCCTTCCTCGGCCTCGGCACC AAGCCGCCGGAGCCGGAATGGGGCCTGATGCTCAACACCCTGCGCACCGCCATCTATGTGAACCCGTGGGTGGCCGCCAT GCCGGGCGTGATGATCTTCGCCGTCTCCATCTGCTTCAACCTCTTGAGTGACGGCCTGCGCAGCGCCATGGACATCAGGA ACTGA
Upstream 100 bases:
>100_bases CAGGGCACCATTCTCGTGCTGGCGCTGTTCTTCGTCTTCCTCAACCTCGTGGTCGATATCGCCCAGGCGTCCATCGATCC GCGCATCAAGCGGGCCTGAC
Downstream 100 bases:
>100_bases CATGCTGGAGCAGCTTGAAGACATTGGCGGCGCCGCGCAGCCTCTGCTGGAGGTGAAGGGCCTCGTGAAGCACTTCCCCG TGGGCGGAGGCCTCTTCGCC
Product: ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MTATDTALQAAPAQKARGYWATVGRRLTRDKVSMVCALILLAILLAALLAPYLHLADPYQGSMVRRLRHIGTPGYPLGTD ELGRDMLSRLIYGGRLSLLIGILPVVLAFIIGTSLGLVAGYAGGWLNTAIMRTVDVFYAFPSVLLAIAISGVLGAGIVNS IVSLTVVFVPQITRVAESVTTGVRNLDFVDAARASGAGALTIMRVHMLGNVLGPIFVYSTGLISVSMILAAGLSFLGLGT KPPEPEWGLMLNTLRTAIYVNPWVAAMPGVMIFAVSICFNLLSDGLRSAMDIRN
Sequences:
>Translated_294_residues MTATDTALQAAPAQKARGYWATVGRRLTRDKVSMVCALILLAILLAALLAPYLHLADPYQGSMVRRLRHIGTPGYPLGTD ELGRDMLSRLIYGGRLSLLIGILPVVLAFIIGTSLGLVAGYAGGWLNTAIMRTVDVFYAFPSVLLAIAISGVLGAGIVNS IVSLTVVFVPQITRVAESVTTGVRNLDFVDAARASGAGALTIMRVHMLGNVLGPIFVYSTGLISVSMILAAGLSFLGLGT KPPEPEWGLMLNTLRTAIYVNPWVAAMPGVMIFAVSICFNLLSDGLRSAMDIRN >Mature_293_residues TATDTALQAAPAQKARGYWATVGRRLTRDKVSMVCALILLAILLAALLAPYLHLADPYQGSMVRRLRHIGTPGYPLGTDE LGRDMLSRLIYGGRLSLLIGILPVVLAFIIGTSLGLVAGYAGGWLNTAIMRTVDVFYAFPSVLLAIAISGVLGAGIVNSI VSLTVVFVPQITRVAESVTTGVRNLDFVDAARASGAGALTIMRVHMLGNVLGPIFVYSTGLISVSMILAAGLSFLGLGTK PPEPEWGLMLNTLRTAIYVNPWVAAMPGVMIFAVSICFNLLSDGLRSAMDIRN
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG1173
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787054, Length=278, Percent_Identity=38.8489208633094, Blast_Score=200, Evalue=9e-53, Organism=Escherichia coli, GI1787760, Length=280, Percent_Identity=32.1428571428571, Blast_Score=155, Evalue=4e-39, Organism=Escherichia coli, GI1789964, Length=284, Percent_Identity=36.9718309859155, Blast_Score=148, Evalue=3e-37, Organism=Escherichia coli, GI1789889, Length=217, Percent_Identity=37.3271889400922, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1787498, Length=282, Percent_Identity=30.1418439716312, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1787549, Length=283, Percent_Identity=30.0353356890459, Blast_Score=115, Evalue=3e-27, Organism=Escherichia coli, GI1788505, Length=220, Percent_Identity=28.6363636363636, Blast_Score=75, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 31145; Mature: 31013
Theoretical pI: Translated: 9.94; Mature: 9.94
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATDTALQAAPAQKARGYWATVGRRLTRDKVSMVCALILLAILLAALLAPYLHLADPYQ CCCCCHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GSMVRRLRHIGTPGYPLGTDELGRDMLSRLIYGGRLSLLIGILPVVLAFIIGTSLGLVAG HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH YAGGWLNTAIMRTVDVFYAFPSVLLAIAISGVLGAGIVNSIVSLTVVFVPQITRVAESVT HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGVRNLDFVDAARASGAGALTIMRVHMLGNVLGPIFVYSTGLISVSMILAAGLSFLGLGT HHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KPPEPEWGLMLNTLRTAIYVNPWVAAMPGVMIFAVSICFNLLSDGLRSAMDIRN CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TATDTALQAAPAQKARGYWATVGRRLTRDKVSMVCALILLAILLAALLAPYLHLADPYQ CCCCHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GSMVRRLRHIGTPGYPLGTDELGRDMLSRLIYGGRLSLLIGILPVVLAFIIGTSLGLVAG HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH YAGGWLNTAIMRTVDVFYAFPSVLLAIAISGVLGAGIVNSIVSLTVVFVPQITRVAESVT HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGVRNLDFVDAARASGAGALTIMRVHMLGNVLGPIFVYSTGLISVSMILAAGLSFLGLGT HHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC KPPEPEWGLMLNTLRTAIYVNPWVAAMPGVMIFAVSICFNLLSDGLRSAMDIRN CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA