Click here to switch to the map view.

The map label for this gene is hslR [H]

Identifier: 158318142

GI number: 158318142

Start: 7776671

End: 7777093

Strand: Reverse

Name: hslR [H]

Synonym: Franean1_6407

Alternate gene names: 158318142

Gene position: 7777093-7776671 (Counterclockwise)

Preceding gene: 158318144

Following gene: 158318139

Centisome position: 86.58

GC content: 69.5

Gene sequence:

>423_bases
GTGTCGGTAGCGATGGGACTCGTCCGGGGGCGGCCGGTTCGTAGAGTCTTCATTATGGCGTCGGTGGAGGAGAGCACTCG
GATCGACATCTGGATCTGGTCCGTCCGGCTCATGAAGACGCGGACGCAGGCCGGAGATGCCTGCCGCGGCGGCCACGTCC
GTCTCAACGGCGAGCGGGTGAAGCCGGCGCGCATGGTCCGCGCCGGCGACGAGGTGCGCCTTCGCCAGGCCGGCCATGAA
CGCATCGTCGTGGTCACCAAGGTCCTCACCAAGCGGGTGGGCGCCGCCGTGGCGGCGGAGTGCTACATCGACAACAGCCC
GCCGCCCCCGGAACGTCTTCCGGTGATGGCGGTTCGCGACCGTGGGACGGGACGTCCGACCAAACGTGACCGCCGCGCGG
TGGAACGCCTGCGCAACCGCTGA

Upstream 100 bases:

>100_bases
AGTTTTGCCCGGCGGGCTCCGTCGGCTCCGCGCAGGTGCAGTTCCTCCCCCGCCATGGTCGCGAGGCTATCGAACCCGAT
CATTCGTGGGTCATCGCCGC

Downstream 100 bases:

>100_bases
CCGGCCGCGGTGGTCAGGGCTCGGTGGTCAGGGCCCGGCTGAGCCGCCAGGTGACGAGACCCAGCTCGGTGGCCTCCGCC
GCCTCCAGCTCGGCCACAGT

Product: RNA-binding S4 domain-containing protein

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MSVAMGLVRGRPVRRVFIMASVEESTRIDIWIWSVRLMKTRTQAGDACRGGHVRLNGERVKPARMVRAGDEVRLRQAGHE
RIVVVTKVLTKRVGAAVAAECYIDNSPPPPERLPVMAVRDRGTGRPTKRDRRAVERLRNR

Sequences:

>Translated_140_residues
MSVAMGLVRGRPVRRVFIMASVEESTRIDIWIWSVRLMKTRTQAGDACRGGHVRLNGERVKPARMVRAGDEVRLRQAGHE
RIVVVTKVLTKRVGAAVAAECYIDNSPPPPERLPVMAVRDRGTGRPTKRDRRAVERLRNR
>Mature_139_residues
SVAMGLVRGRPVRRVFIMASVEESTRIDIWIWSVRLMKTRTQAGDACRGGHVRLNGERVKPARMVRAGDEVRLRQAGHER
IVVVTKVLTKRVGAAVAAECYIDNSPPPPERLPVMAVRDRGTGRPTKRDRRAVERLRNR

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=120, Percent_Identity=31.6666666666667, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 15819; Mature: 15688

Theoretical pI: Translated: 12.16; Mature: 12.16

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVAMGLVRGRPVRRVFIMASVEESTRIDIWIWSVRLMKTRTQAGDACRGGHVRLNGERV
CCCCHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEEEEHHHCCCCCCCCCCEEEECCCCC
KPARMVRAGDEVRLRQAGHERIVVVTKVLTKRVGAAVAAECYIDNSPPPPERLPVMAVRD
CHHHHHHCCCHHHHHHCCCCEEEHHHHHHHHHHCHHHEEEEEECCCCCCCCCCCEEEEEC
RGTGRPTKRDRRAVERLRNR
CCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
SVAMGLVRGRPVRRVFIMASVEESTRIDIWIWSVRLMKTRTQAGDACRGGHVRLNGERV
CCCHHHHCCCCEEEEEEEEECCCCCEEEEEEEEEEEEHHHCCCCCCCCCCEEEECCCCC
KPARMVRAGDEVRLRQAGHERIVVVTKVLTKRVGAAVAAECYIDNSPPPPERLPVMAVRD
CHHHHHHCCCHHHHHHCCCCEEEHHHHHHHHHHCHHHEEEEEECCCCCCCCCCCEEEEEC
RGTGRPTKRDRRAVERLRNR
CCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]