Definition | Frankia sp. EAN1pec chromosome, complete genome. |
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Accession | NC_009921 |
Length | 8,982,042 |
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The map label for this gene is 158313698
Identifier: 158313698
GI number: 158313698
Start: 2238432
End: 2238869
Strand: Direct
Name: 158313698
Synonym: Franean1_1862
Alternate gene names: NA
Gene position: 2238432-2238869 (Clockwise)
Preceding gene: 158313697
Following gene: 158313700
Centisome position: 24.92
GC content: 69.18
Gene sequence:
>438_bases GTGAGTCCGACCGCGGCGAACGCCGAGGGTCAGCGCCGTGCGGAACGTCTGGGAGTCATGGCCGGCACCTTGGTCCAGTC GCTCAACGAGGACGACGACATCGCCCAGGATCTCCTGGACGCGGTCACGACCTCGAGTGGCACCGACCTCGTCCCGGAGG ACTCCGACGACGTGGTAGACGTCGTGCTCCTCTGGTGGCGCGAGGATGACGGTGATCTTGCCAACGCCCTCATTGACGCG CGTAGGCAGTTGTCCGAGGACGGCGTGATCTGGCTGCTTACCCCGAAGGCTGGCCGTGACGGCCACGTCGAGCCCAGCGA CGTCCTGGACGCCGTGCCGACCGCCGGCCTCGTCCAGACCAGCACCGTCAGCGTCGCGGCCGAATGGGCCGGAATGCGGC TGGCCGCCCCGAAGTCCCAGCGGGTCCGCCACCGCTGA
Upstream 100 bases:
>100_bases GGCGGGTCGCGCGAGCGGATCGTCGCCGAACCGGTCCGCCCACGACCGGGGCGCCTCGCGACCGCGGAGCGTCGTGTAGA CGAGCAGGAGGTAGCGGAGG
Downstream 100 bases:
>100_bases GGCCCCGGGCGCCCGCGCGCGTCCGAGGCCTCAGCGGCGGCGATCTCCCCAGTCGGGGTCGCAACCGATCGGCGTGACGT GCTTGCCGACGGTTCTTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MSPTAANAEGQRRAERLGVMAGTLVQSLNEDDDIAQDLLDAVTTSSGTDLVPEDSDDVVDVVLLWWREDDGDLANALIDA RRQLSEDGVIWLLTPKAGRDGHVEPSDVLDAVPTAGLVQTSTVSVAAEWAGMRLAAPKSQRVRHR
Sequences:
>Translated_145_residues MSPTAANAEGQRRAERLGVMAGTLVQSLNEDDDIAQDLLDAVTTSSGTDLVPEDSDDVVDVVLLWWREDDGDLANALIDA RRQLSEDGVIWLLTPKAGRDGHVEPSDVLDAVPTAGLVQTSTVSVAAEWAGMRLAAPKSQRVRHR >Mature_144_residues SPTAANAEGQRRAERLGVMAGTLVQSLNEDDDIAQDLLDAVTTSSGTDLVPEDSDDVVDVVLLWWREDDGDLANALIDAR RQLSEDGVIWLLTPKAGRDGHVEPSDVLDAVPTAGLVQTSTVSVAAEWAGMRLAAPKSQRVRHR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021412 [H]
Pfam domain/function: PF11253 DUF3052 [H]
EC number: NA
Molecular weight: Translated: 15570; Mature: 15439
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPTAANAEGQRRAERLGVMAGTLVQSLNEDDDIAQDLLDAVTTSSGTDLVPEDSDDVVD CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE VVLLWWREDDGDLANALIDARRQLSEDGVIWLLTPKAGRDGHVEPSDVLDAVPTAGLVQT EHHEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCEEC STVSVAAEWAGMRLAAPKSQRVRHR HHHHHHHHHCCCEECCCCHHHCCCC >Mature Secondary Structure SPTAANAEGQRRAERLGVMAGTLVQSLNEDDDIAQDLLDAVTTSSGTDLVPEDSDDVVD CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEE VVLLWWREDDGDLANALIDARRQLSEDGVIWLLTPKAGRDGHVEPSDVLDAVPTAGLVQT EHHEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCEEC STVSVAAEWAGMRLAAPKSQRVRHR HHHHHHHHHCCCEECCCCHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]