Definition | Frankia sp. EAN1pec chromosome, complete genome. |
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Accession | NC_009921 |
Length | 8,982,042 |
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The map label for this gene is bcp [C]
Identifier: 158313700
GI number: 158313700
Start: 2240365
End: 2240823
Strand: Direct
Name: bcp [C]
Synonym: Franean1_1864
Alternate gene names: 158313700
Gene position: 2240365-2240823 (Clockwise)
Preceding gene: 158313698
Following gene: 158313701
Centisome position: 24.94
GC content: 65.36
Gene sequence:
>459_bases GTGACCGTCGACGTCGGAGCCGTCGCCCCCGACTTCTCGTTGAAGGACCAGAACAACGAGGTCGTCACCCTGTCCGACTT CCGGGGCCGCCGCAACGTGGTGCTCCTGTTCTACCCGCTGACCTTCACCGGCGTCTGCCAGGGCGAGCTGTGCTCCGTCC GGGACGACCTGGCCTCCTTCCAGAACGACGACGTGCAGGTACTGGCCATCTCCGTCGACTCCTCCTTCGCGCACAAGGTC TGGGCCGACCAGCAGGGCTACGAGTTCCCGCTGCTGGCCGACTTCTGGCCGCACGGCGAGGTGGCGAAGGCCTACGGGGT CTTCAACGAGGAGAAGGGCATCTCCCTCCGCGGAACCTTCATCATCGACAAGGAGGGCAAGGTGCGCTGGAAGGTCGTCA ACAACATTCCGGACGCACGCGACCAGGCCGAGTACCTCAAGGCCCTCGCCTCGCTGTAG
Upstream 100 bases:
>100_bases CGGTGGCATGCTGGCGGAGAGGACCGACAGGTCGCGAAGACCGAGAGGTCGAACAGCACCGCAGGACGCGAAAACCAACC GCAATCGAGAGGAAGAGCTC
Downstream 100 bases:
>100_bases TCCCGGCGAGCGGCGGGCCGGGTCGCCTCGCCCGTCGGACCCCCGCGAGGTGTTCCCGTGCCAGGGAACACCTCGCGGGG GTCCCGGCGTGGCATGGCAC
Product: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
Products: NA
Alternate protein names: Thioredoxin reductase [H]
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MTVDVGAVAPDFSLKDQNNEVVTLSDFRGRRNVVLLFYPLTFTGVCQGELCSVRDDLASFQNDDVQVLAISVDSSFAHKV WADQQGYEFPLLADFWPHGEVAKAYGVFNEEKGISLRGTFIIDKEGKVRWKVVNNIPDARDQAEYLKALASL
Sequences:
>Translated_152_residues MTVDVGAVAPDFSLKDQNNEVVTLSDFRGRRNVVLLFYPLTFTGVCQGELCSVRDDLASFQNDDVQVLAISVDSSFAHKV WADQQGYEFPLLADFWPHGEVAKAYGVFNEEKGISLRGTFIIDKEGKVRWKVVNNIPDARDQAEYLKALASL >Mature_151_residues TVDVGAVAPDFSLKDQNNEVVTLSDFRGRRNVVLLFYPLTFTGVCQGELCSVRDDLASFQNDDVQVLAISVDSSFAHKVW ADQQGYEFPLLADFWPHGEVAKAYGVFNEEKGISLRGTFIIDKEGKVRWKVVNNIPDARDQAEYLKALASL
Specific function: Unknown
COG id: COG1225
COG function: function code O; Peroxiredoxin
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI4505591, Length=153, Percent_Identity=38.562091503268, Blast_Score=97, Evalue=6e-21, Organism=Homo sapiens, GI32455266, Length=153, Percent_Identity=38.562091503268, Blast_Score=97, Evalue=6e-21, Organism=Homo sapiens, GI32455264, Length=153, Percent_Identity=38.562091503268, Blast_Score=97, Evalue=6e-21, Organism=Homo sapiens, GI32189392, Length=158, Percent_Identity=36.7088607594937, Blast_Score=91, Evalue=4e-19, Organism=Homo sapiens, GI5453549, Length=133, Percent_Identity=39.0977443609023, Blast_Score=90, Evalue=7e-19, Organism=Homo sapiens, GI5802974, Length=133, Percent_Identity=36.0902255639098, Blast_Score=86, Evalue=1e-17, Organism=Homo sapiens, GI32483377, Length=133, Percent_Identity=36.0902255639098, Blast_Score=86, Evalue=1e-17, Organism=Escherichia coli, GI1788825, Length=131, Percent_Identity=35.8778625954198, Blast_Score=75, Evalue=2e-15, Organism=Escherichia coli, GI1786822, Length=134, Percent_Identity=29.8507462686567, Blast_Score=66, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193204376, Length=158, Percent_Identity=35.4430379746835, Blast_Score=91, Evalue=2e-19, Organism=Caenorhabditis elegans, GI32565831, Length=158, Percent_Identity=35.4430379746835, Blast_Score=91, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17554494, Length=144, Percent_Identity=34.7222222222222, Blast_Score=91, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6323613, Length=157, Percent_Identity=34.3949044585987, Blast_Score=82, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6320661, Length=157, Percent_Identity=33.7579617834395, Blast_Score=79, Evalue=3e-16, Organism=Drosophila melanogaster, GI17738015, Length=160, Percent_Identity=36.25, Blast_Score=97, Evalue=5e-21, Organism=Drosophila melanogaster, GI21357347, Length=159, Percent_Identity=37.7358490566038, Blast_Score=94, Evalue=4e-20, Organism=Drosophila melanogaster, GI17157991, Length=138, Percent_Identity=38.4057971014493, Blast_Score=92, Evalue=1e-19, Organism=Drosophila melanogaster, GI24641739, Length=138, Percent_Identity=38.4057971014493, Blast_Score=92, Evalue=1e-19, Organism=Drosophila melanogaster, GI24656348, Length=139, Percent_Identity=38.8489208633094, Blast_Score=92, Evalue=1e-19, Organism=Drosophila melanogaster, GI17864676, Length=139, Percent_Identity=38.8489208633094, Blast_Score=92, Evalue=1e-19,
Paralogues:
None
Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA [H]
EC number: =1.11.1.15 [H]
Molecular weight: Translated: 16975; Mature: 16844
Theoretical pI: Translated: 4.52; Mature: 4.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVDVGAVAPDFSLKDQNNEVVTLSDFRGRRNVVLLFYPLTFTGVCQGELCSVRDDLASF CEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHC QNDDVQVLAISVDSSFAHKVWADQQGYEFPLLADFWPHGEVAKAYGVFNEEKGISLRGTF CCCCEEEEEEEECCCCHHHHCCCCCCCCCCEEECCCCCCCHHHHHCCCCCCCCCEEEEEE IIDKEGKVRWKVVNNIPDARDQAEYLKALASL EEECCCCEEEEEECCCCCCCHHHHHHHHHHCC >Mature Secondary Structure TVDVGAVAPDFSLKDQNNEVVTLSDFRGRRNVVLLFYPLTFTGVCQGELCSVRDDLASF EEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCEEECCCCCHHHHHHHHHHC QNDDVQVLAISVDSSFAHKVWADQQGYEFPLLADFWPHGEVAKAYGVFNEEKGISLRGTF CCCCEEEEEEEECCCCHHHHCCCCCCCCCCEEECCCCCCCHHHHHCCCCCCCCCEEEEEE IIDKEGKVRWKVVNNIPDARDQAEYLKALASL EEECCCCEEEEEECCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]