Definition | Frankia sp. EAN1pec chromosome, complete genome. |
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Accession | NC_009921 |
Length | 8,982,042 |
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The map label for this gene is 158313697
Identifier: 158313697
GI number: 158313697
Start: 2237650
End: 2238039
Strand: Direct
Name: 158313697
Synonym: Franean1_1861
Alternate gene names: NA
Gene position: 2237650-2238039 (Clockwise)
Preceding gene: 158313694
Following gene: 158313698
Centisome position: 24.91
GC content: 73.33
Gene sequence:
>390_bases ATGACGGTGCGGACGGGGCGCGACGAACGGGTCGTCGACCTCACCGAGCCGGCGGCCGAGTTCGTCGCCGGCCGGGGCGA CGGGCTGCTGTCCGTCTTCATCCCGCACGCGACGGCGGGCGTGGCCATCCTCGAGCTGGGCGCCGGCAGCGACGACGACC TCCTCGCCGCCCTGGCCGCCCTGCTGCCCGCCGACGACCGCTGGCGGCACGCCCACGGCTCGCCCGGGCATGGCCGCTCA CACGTGATGCCAGCCATCATCCCGCCGTCCCTGACCGTTCCCGTCCTGGACGGGCGGCTCGCGCTCGGTACCTGGCAGTC GGTGGCGCTTGTCGACCTCAATGTGGACAACCCTGAGCGAACCGTCCGGTTCTCCTTCCTGCCGGGCTGA
Upstream 100 bases:
>100_bases TGCGGGCGGTCGCACCGGCAGGTGCGGGATGGTTGGGGATACGTGCGCCCGAGTTGTGGACGCCCGCCGAGGGAGGGACG CCACCGTGGAGACGAAGACG
Downstream 100 bases:
>100_bases CCGGCCCGGTCAGCCCCGCCCGGCGGGCAAAGTCCGGCCAGTGCGCCCACTCCGGCGCCGGACCTGGGATCATCGGAACG GCCAGGAGACGTCCGACATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 129; Mature: 128
Protein sequence:
>129_residues MTVRTGRDERVVDLTEPAAEFVAGRGDGLLSVFIPHATAGVAILELGAGSDDDLLAALAALLPADDRWRHAHGSPGHGRS HVMPAIIPPSLTVPVLDGRLALGTWQSVALVDLNVDNPERTVRFSFLPG
Sequences:
>Translated_129_residues MTVRTGRDERVVDLTEPAAEFVAGRGDGLLSVFIPHATAGVAILELGAGSDDDLLAALAALLPADDRWRHAHGSPGHGRS HVMPAIIPPSLTVPVLDGRLALGTWQSVALVDLNVDNPERTVRFSFLPG >Mature_128_residues TVRTGRDERVVDLTEPAAEFVAGRGDGLLSVFIPHATAGVAILELGAGSDDDLLAALAALLPADDRWRHAHGSPGHGRSH VMPAIIPPSLTVPVLDGRLALGTWQSVALVDLNVDNPERTVRFSFLPG
Specific function: Unknown
COG id: COG0432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0047 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001602 [H]
Pfam domain/function: PF01894 UPF0047 [H]
EC number: NA
Molecular weight: Translated: 13590; Mature: 13458
Theoretical pI: Translated: 5.08; Mature: 5.08
Prosite motif: PS01314 UPF0047
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVRTGRDERVVDLTEPAAEFVAGRGDGLLSVFIPHATAGVAILELGAGSDDDLLAALAA CCCCCCCCCEEEECCCHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHH LLPADDRWRHAHGSPGHGRSHVMPAIIPPSLTVPVLDGRLALGTWQSVALVDLNVDNPER HCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCEEEECCCCEEEEEEECCCCCCC TVRFSFLPG EEEEEECCC >Mature Secondary Structure TVRTGRDERVVDLTEPAAEFVAGRGDGLLSVFIPHATAGVAILELGAGSDDDLLAALAA CCCCCCCCEEEECCCHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCCCHHHHHHHHH LLPADDRWRHAHGSPGHGRSHVMPAIIPPSLTVPVLDGRLALGTWQSVALVDLNVDNPER HCCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCEEEECCCCEEEEEEECCCCCCC TVRFSFLPG EEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]