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The map label for this gene is kdsD [H]

Identifier: 157963425

GI number: 157963425

Start: 4403579

End: 4404556

Strand: Direct

Name: kdsD [H]

Synonym: Spea_3611

Alternate gene names: 157963425

Gene position: 4403579-4404556 (Clockwise)

Preceding gene: 157963424

Following gene: 157963426

Centisome position: 85.1

GC content: 46.83

Gene sequence:

>978_bases
ATGGTAGATGAGAATCAACTACGCCAATGGGGTACAAAAGTTATCGATATCGAGAAACAAGCACTCGATAATCTATACCA
GTACATCGACTCTTCAGAATTTGCCCAGGCTTGCCAATTAATTTTGCAATGCACAGGTAAAGTTATCGTGATGGGCATGG
GCAAATCAGGCCATATCGGCAACAAGATCTCAGCCACATTAGCCAGCACAGGTACACCAGCATTTTTCGTTCACCCAGGT
GAAGCTAGCCATGGCGACCTTGGCGTTTTGAGCGAAAACGATATCGTACTTGCGATTTCAAACTCTGGCGAATCGAGCGA
AATCTTAACCCTAATGCCTGTGATTAAGCGCATGGGGTTACCTATGATCTCGGTAACCGGTAAGCCTGACTCTAATATGG
CCAAGCTTGCACAGCTGCACCTTTGCATTGAAGTGCCAGAGGAAGCCTGCCCATTAGGGCTAGCACCAACATCTAGCACT
ACGGCAACCTTAGTAATGGGGGATGCCCTAGCGGTGGCACTGCTGCAAGCACGTGGCTTTACTCAAGACGACTTCGCACT
GTCACACCCTGGCGGTAGCCTAGGTCGCAAGTTACTGCTAAAAGTTAGTGATGTAATGCATAAAGGTGATGAGTTACCTC
GTGTGCAAGATAATATCTGCATCACAGATGCCTTATACGAGATATCGAAGAAAGGCTTAGGCATGACAGCCGTTGTGGAC
AGTAACAATACCTTAGTCGGCATCTTCACCGATGGCGATCTACGTCGAGTTATCGATGCTGACGTTAACTTAAGAACCAC
ACCGATTGCCGATGTGATGACCAAAGGCTGCGTCACCATTACCGAAAATGTACTTGCAGCTGAAGCGTTAAAAGTCATGG
ATACTAAGAGCATTAACGGCCTAGTGGTGATTAATGACAAGCAGCAACCTGTCGGCGCATTAAACATGCTCGATATGGTC
AAAGCAGGAGTAATTTAA

Upstream 100 bases:

>100_bases
GTAGTATTACTTATTACATTTATCGCATACCAAGCACTACTTTTCCTATCTTAGCTGTGGGTGCGGTACGTTAAGCAGAA
ATTTAAAGAGAGACCAAGAA

Downstream 100 bases:

>100_bases
TATGTCTCACCAAGGCTTCTACGGCCCGATTAGCGATGATGTTTGGCAAGCGGCAAGCAAGATCAAACTACTGATTTGCG
ATGTTGACGGCGTGTTTTCA

Product: KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MVDENQLRQWGTKVIDIEKQALDNLYQYIDSSEFAQACQLILQCTGKVIVMGMGKSGHIGNKISATLASTGTPAFFVHPG
EASHGDLGVLSENDIVLAISNSGESSEILTLMPVIKRMGLPMISVTGKPDSNMAKLAQLHLCIEVPEEACPLGLAPTSST
TATLVMGDALAVALLQARGFTQDDFALSHPGGSLGRKLLLKVSDVMHKGDELPRVQDNICITDALYEISKKGLGMTAVVD
SNNTLVGIFTDGDLRRVIDADVNLRTTPIADVMTKGCVTITENVLAAEALKVMDTKSINGLVVINDKQQPVGALNMLDMV
KAGVI

Sequences:

>Translated_325_residues
MVDENQLRQWGTKVIDIEKQALDNLYQYIDSSEFAQACQLILQCTGKVIVMGMGKSGHIGNKISATLASTGTPAFFVHPG
EASHGDLGVLSENDIVLAISNSGESSEILTLMPVIKRMGLPMISVTGKPDSNMAKLAQLHLCIEVPEEACPLGLAPTSST
TATLVMGDALAVALLQARGFTQDDFALSHPGGSLGRKLLLKVSDVMHKGDELPRVQDNICITDALYEISKKGLGMTAVVD
SNNTLVGIFTDGDLRRVIDADVNLRTTPIADVMTKGCVTITENVLAAEALKVMDTKSINGLVVINDKQQPVGALNMLDMV
KAGVI
>Mature_325_residues
MVDENQLRQWGTKVIDIEKQALDNLYQYIDSSEFAQACQLILQCTGKVIVMGMGKSGHIGNKISATLASTGTPAFFVHPG
EASHGDLGVLSENDIVLAISNSGESSEILTLMPVIKRMGLPMISVTGKPDSNMAKLAQLHLCIEVPEEACPLGLAPTSST
TATLVMGDALAVALLQARGFTQDDFALSHPGGSLGRKLLLKVSDVMHKGDELPRVQDNICITDALYEISKKGLGMTAVVD
SNNTLVGIFTDGDLRRVIDADVNLRTTPIADVMTKGCVTITENVLAAEALKVMDTKSINGLVVINDKQQPVGALNMLDMV
KAGVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=319, Percent_Identity=58.6206896551724, Blast_Score=394, Evalue=1e-111,
Organism=Escherichia coli, GI87082151, Length=315, Percent_Identity=45.0793650793651, Blast_Score=276, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34529; Mature: 34529

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDENQLRQWGTKVIDIEKQALDNLYQYIDSSEFAQACQLILQCTGKVIVMGMGKSGHIG
CCCHHHHHHHCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
NKISATLASTGTPAFFVHPGEASHGDLGVLSENDIVLAISNSGESSEILTLMPVIKRMGL
CCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCC
PMISVTGKPDSNMAKLAQLHLCIEVPEEACPLGLAPTSSTTATLVMGDALAVALLQARGF
CEEEEECCCCCHHHHHHHHHHEEECCHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCC
TQDDFALSHPGGSLGRKLLLKVSDVMHKGDELPRVQDNICITDALYEISKKGLGMTAVVD
CCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEE
SNNTLVGIFTDGDLRRVIDADVNLRTTPIADVMTKGCVTITENVLAAEALKVMDTKSING
CCCEEEEEEECCCCHHHHCCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCE
LVVINDKQQPVGALNMLDMVKAGVI
EEEECCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MVDENQLRQWGTKVIDIEKQALDNLYQYIDSSEFAQACQLILQCTGKVIVMGMGKSGHIG
CCCHHHHHHHCCEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
NKISATLASTGTPAFFVHPGEASHGDLGVLSENDIVLAISNSGESSEILTLMPVIKRMGL
CCCEEEEECCCCCEEEEECCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHHHCCC
PMISVTGKPDSNMAKLAQLHLCIEVPEEACPLGLAPTSSTTATLVMGDALAVALLQARGF
CEEEEECCCCCHHHHHHHHHHEEECCHHHCCCCCCCCCCCEEEEEEHHHHHHHHHHHCCC
TQDDFALSHPGGSLGRKLLLKVSDVMHKGDELPRVQDNICITDALYEISKKGLGMTAVVD
CCCCCEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEE
SNNTLVGIFTDGDLRRVIDADVNLRTTPIADVMTKGCVTITENVLAAEALKVMDTKSING
CCCEEEEEEECCCCHHHHCCCCCEECCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCE
LVVINDKQQPVGALNMLDMVKAGVI
EEEECCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]