| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is 157963387
Identifier: 157963387
GI number: 157963387
Start: 4359631
End: 4361781
Strand: Direct
Name: 157963387
Synonym: Spea_3573
Alternate gene names: NA
Gene position: 4359631-4361781 (Clockwise)
Preceding gene: 157963381
Following gene: 157963396
Centisome position: 84.25
GC content: 46.82
Gene sequence:
>2151_bases ATGATGATAATGACAAAAAAAACATCACTAGCTTTACTGATTGGCTCAGCGCTATTTATAGGCGGTTGCTCAGATGGTAA AGATGGCAAAGATGGAGAAGATGGCACACCTGGTGGCGGCGGAGAACCTGGCACTTCAGGCCTACACATAGATATGGCCG CTGAAGCCATCGCAACAATCAATAATGCCGTATATGCAGACGGTATCATCACCCTTGATTTTGAACTTGAAAACAAACAA GGCGTTGGCTTATACGGTTTAAGCTCAGACAACAAGTTTCACGATTTCCGCTTCTCACTCGCCCAACTACAAACCAACGA TGGAGCAGAGCTAAAACAGTGGTTTTCACTATTAAACGCAGCAACAAATGACGCAGGAACCACCTTCGAGCAAGGGTTCG AATCAATTAAAGATTGCGCTGATTGCTTAGTTGACCATAAAGACGGTACTTACACTTATACTTTCAAGACTAATCTCACA ACAGCTGACGACGCTGCAGGCATCGTTTTCGATCCAGCATTAACCCAGCGTATTGCAATGGAAATGCAGTTTGAATATGA CTCAGGTCATGAGCTAGCAGAAAACGCCCATTACGATTGGATCCCTGCGACAAACGCAACTGACGGTGTTGAGACTCGCG ATCTTGTGACCTTAGAGACATGTTACTCTTGTCACCAACCTGCTAGCCTAAAAGCGCACGGCGGCCGCCGCTTAGACATG GAAAACTGCCAATCTTGTCATAACGGTCTTGTTACCGATCCTAAGGCTATCTCGGTAGAGCTAGGCCATATGGTGCATGC TATTCATATGGGCGAAAACCGTGAAGGCAAAGATGCTGAAGGTAATGTAGTGCCTATGCCATACACCATTGCTGGCTACG GCGGCGATCATGCATTCGACTACCCAGCATTCCCAACTAAGCCTGTTATGGACTGTACAACCTGTCACGTTGAAGATGAA ACCCTAGCAGATAAAGATCTGTGGTTGGCCAACGCCAATACCAATTCCTGTACAGGCTGTCATACAGACTCTCCTGCACA GCACAAATCGGATAAGAATCCTGAACTTGCTTGTACCGATTGCCACCAAGTTGACCACCGCAAGTTTAATAAGCCATACG AGTCAGCAGCCGCTTATGACGTGAAATTTGAAAATGTTAAAGTAGAAAACGGTGCTATTAGTTTCGAAGCAAAAGCCCTG GATAGTGAAGGCGCGATTGTTTCAGGCTTAAGTCACAAAGTTTATAAATATACCGCACCTGTGGTACAGGTTTCTTGGAA TGTTGAGAACGACGGCGCAATTGGTGATGCAACAGCAGACTCTAGCCCATGGGCTCGCGAAATTGAGTTCCTTCGTCCAA CAACGACTAACCCAACGCCAGATCATGTATTACCAGACAATGGTGTGATGACGGTTGATACGAAGGATATGGGTATTCCA GACGGCGTGTCTGTAGAGCTTATGCCAATCTTCAGCATCTGTTTCGATGCGCAAGGCGTTGATATTGACTGCGCTTCAGA TAAAGTTGCAGGCAGTGCTTATATCAAATCAGAGCCACACCGCATCAATATGCCAACCGATGACAAAGGCGATGTCGTTG CACGTCGCGCCATCTTAGATGAAGCTAAGTGCCGCGATTGTCACAGCGCTGAAATTCGTCATAAAGATAACGGTCTTGTC GCCTGTGAGGCTTGTCATACCAGCGATCAAGGCTTACAAGATGATACGGTAGATGGCGTAAAACAGTTCCGTGGTGCAGG TTTTGCTTGGAAGGTACACAAAGCATCTGGTCACTATATGAATAAGAAATATGGTGGTTCAGGTACGGTAATGAAGACCG ACTGTGCAACTTGTCACGTGACAGATGAAAGCGGCAATGTCGACGGTATCGAGTTAGGCCGTGCTAGCGAAGGCCGTACC TACGTATTCCCAACCACTAAGACTGATGGCACAGCTATGTACGCTTCTGCTGACGCTGGTGCTTGTATGACTTGTCACTG GGGTCATGAGAGTGACGCCATGCTAAGCCACTTCAAGAGCAATGGCGGCTACTATGGTCCAGATAAGGCTGATGCAATAA AAGGTACAGCTGAAGAAGCTTGCGCCGTTTGTCATAGCCCAGCCAAGTTGATGGAAGTACACAATAAGTAA
Upstream 100 bases:
>100_bases CTAATAAAGCAAGAATTCATCAAGTGATCCACTTCATATCAAAGGCCAAGCAAGATTAATAACATTTCAGCAACCGAGAA TGGTTACCTTTAAGGAATGT
Downstream 100 bases:
>100_bases ACTGATTCAGCTTACTTAAGCAGTCTGAGGCGCCCTCGGGAGCCTCATCTGTTTACCTGATAAAGAGAAACGTCAGGTAA ACACCACCTAGGATAAAGGG
Product: decaheme cytochrome c
Products: NA
Alternate protein names: Decaheme C-Type Cytochrome OmcA/MtrC Family; Decaheme Cytochrome C MtrF; Decaheme Cytochrome C-Like Protein
Number of amino acids: Translated: 716; Mature: 716
Protein sequence:
>716_residues MMIMTKKTSLALLIGSALFIGGCSDGKDGKDGEDGTPGGGGEPGTSGLHIDMAAEAIATINNAVYADGIITLDFELENKQ GVGLYGLSSDNKFHDFRFSLAQLQTNDGAELKQWFSLLNAATNDAGTTFEQGFESIKDCADCLVDHKDGTYTYTFKTNLT TADDAAGIVFDPALTQRIAMEMQFEYDSGHELAENAHYDWIPATNATDGVETRDLVTLETCYSCHQPASLKAHGGRRLDM ENCQSCHNGLVTDPKAISVELGHMVHAIHMGENREGKDAEGNVVPMPYTIAGYGGDHAFDYPAFPTKPVMDCTTCHVEDE TLADKDLWLANANTNSCTGCHTDSPAQHKSDKNPELACTDCHQVDHRKFNKPYESAAAYDVKFENVKVENGAISFEAKAL DSEGAIVSGLSHKVYKYTAPVVQVSWNVENDGAIGDATADSSPWAREIEFLRPTTTNPTPDHVLPDNGVMTVDTKDMGIP DGVSVELMPIFSICFDAQGVDIDCASDKVAGSAYIKSEPHRINMPTDDKGDVVARRAILDEAKCRDCHSAEIRHKDNGLV ACEACHTSDQGLQDDTVDGVKQFRGAGFAWKVHKASGHYMNKKYGGSGTVMKTDCATCHVTDESGNVDGIELGRASEGRT YVFPTTKTDGTAMYASADAGACMTCHWGHESDAMLSHFKSNGGYYGPDKADAIKGTAEEACAVCHSPAKLMEVHNK
Sequences:
>Translated_716_residues MMIMTKKTSLALLIGSALFIGGCSDGKDGKDGEDGTPGGGGEPGTSGLHIDMAAEAIATINNAVYADGIITLDFELENKQ GVGLYGLSSDNKFHDFRFSLAQLQTNDGAELKQWFSLLNAATNDAGTTFEQGFESIKDCADCLVDHKDGTYTYTFKTNLT TADDAAGIVFDPALTQRIAMEMQFEYDSGHELAENAHYDWIPATNATDGVETRDLVTLETCYSCHQPASLKAHGGRRLDM ENCQSCHNGLVTDPKAISVELGHMVHAIHMGENREGKDAEGNVVPMPYTIAGYGGDHAFDYPAFPTKPVMDCTTCHVEDE TLADKDLWLANANTNSCTGCHTDSPAQHKSDKNPELACTDCHQVDHRKFNKPYESAAAYDVKFENVKVENGAISFEAKAL DSEGAIVSGLSHKVYKYTAPVVQVSWNVENDGAIGDATADSSPWAREIEFLRPTTTNPTPDHVLPDNGVMTVDTKDMGIP DGVSVELMPIFSICFDAQGVDIDCASDKVAGSAYIKSEPHRINMPTDDKGDVVARRAILDEAKCRDCHSAEIRHKDNGLV ACEACHTSDQGLQDDTVDGVKQFRGAGFAWKVHKASGHYMNKKYGGSGTVMKTDCATCHVTDESGNVDGIELGRASEGRT YVFPTTKTDGTAMYASADAGACMTCHWGHESDAMLSHFKSNGGYYGPDKADAIKGTAEEACAVCHSPAKLMEVHNK >Mature_716_residues MMIMTKKTSLALLIGSALFIGGCSDGKDGKDGEDGTPGGGGEPGTSGLHIDMAAEAIATINNAVYADGIITLDFELENKQ GVGLYGLSSDNKFHDFRFSLAQLQTNDGAELKQWFSLLNAATNDAGTTFEQGFESIKDCADCLVDHKDGTYTYTFKTNLT TADDAAGIVFDPALTQRIAMEMQFEYDSGHELAENAHYDWIPATNATDGVETRDLVTLETCYSCHQPASLKAHGGRRLDM ENCQSCHNGLVTDPKAISVELGHMVHAIHMGENREGKDAEGNVVPMPYTIAGYGGDHAFDYPAFPTKPVMDCTTCHVEDE TLADKDLWLANANTNSCTGCHTDSPAQHKSDKNPELACTDCHQVDHRKFNKPYESAAAYDVKFENVKVENGAISFEAKAL DSEGAIVSGLSHKVYKYTAPVVQVSWNVENDGAIGDATADSSPWAREIEFLRPTTTNPTPDHVLPDNGVMTVDTKDMGIP DGVSVELMPIFSICFDAQGVDIDCASDKVAGSAYIKSEPHRINMPTDDKGDVVARRAILDEAKCRDCHSAEIRHKDNGLV ACEACHTSDQGLQDDTVDGVKQFRGAGFAWKVHKASGHYMNKKYGGSGTVMKTDCATCHVTDESGNVDGIELGRASEGRT YVFPTTKTDGTAMYASADAGACMTCHWGHESDAMLSHFKSNGGYYGPDKADAIKGTAEEACAVCHSPAKLMEVHNK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77085; Mature: 77085
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51008 MULTIHEME_CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 6.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMIMTKKTSLALLIGSALFIGGCSDGKDGKDGEDGTPGGGGEPGTSGLHIDMAAEAIATI CEEEECCCCEEEEEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHH NNAVYADGIITLDFELENKQGVGLYGLSSDNKFHDFRFSLAQLQTNDGAELKQWFSLLNA CCCEEECCEEEEEEEECCCCCCEEEEECCCCCCHHHEEEEEEEECCCCHHHHHHHHHHHH ATNDAGTTFEQGFESIKDCADCLVDHKDGTYTYTFKTNLTTADDAAGIVFDPALTQRIAM CCCCCCCHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCCCCCCCEEECHHHHHHEEE EMQFEYDSGHELAENAHYDWIPATNATDGVETRDLVTLETCYSCHQPASLKAHGGRRLDM EEEEECCCCCHHHHCCCCCEECCCCCCCCCCCCCEEEHHHHHCCCCCCCEECCCCCEECH ENCQSCHNGLVTDPKAISVELGHMVHAIHMGENREGKDAEGNVVPMPYTIAGYGGDHAFD HHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEECCEEEEECCCCCCCC YPAFPTKPVMDCTTCHVEDETLADKDLWLANANTNSCTGCHTDSPAQHKSDKNPELACTD CCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCCEEECC CHQVDHRKFNKPYESAAAYDVKFENVKVENGAISFEAKALDSEGAIVSGLSHKVYKYTAP HHHHHHHHCCCCHHHCCEEEEEEEEEEEECCEEEEEEEECCCCCCEEECCCCCEEEEECC VVQVSWNVENDGAIGDATADSSPWAREIEFLRPTTTNPTPDHVLPDNGVMTVDTKDMGIP EEEEEEECCCCCCCCCCCCCCCCHHHHHHEECCCCCCCCCCCCCCCCCEEEECCCCCCCC DGVSVELMPIFSICFDAQGVDIDCASDKVAGSAYIKSEPHRINMPTDDKGDVVARRAILD CCCCEEEEEHHHHHCCCCCCEEECCCCCCCCCEEECCCCCEECCCCCCCCCHHHHHHHHH EAKCRDCHSAEIRHKDNGLVACEACHTSDQGLQDDTVDGVKQFRGAGFAWKVHKASGHYM HHHCCCCCCCCEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC NKKYGGSGTVMKTDCATCHVTDESGNVDGIELGRASEGRTYVFPTTKTDGTAMYASADAG CCEECCCCCEEEECCCEEEEECCCCCCCCEEECCCCCCCEEEEECCCCCCCEEEEECCCC ACMTCHWGHESDAMLSHFKSNGGYYGPDKADAIKGTAEEACAVCHSPAKLMEVHNK CEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHCCCHHHHHHCCC >Mature Secondary Structure MMIMTKKTSLALLIGSALFIGGCSDGKDGKDGEDGTPGGGGEPGTSGLHIDMAAEAIATI CEEEECCCCEEEEEECEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHH NNAVYADGIITLDFELENKQGVGLYGLSSDNKFHDFRFSLAQLQTNDGAELKQWFSLLNA CCCEEECCEEEEEEEECCCCCCEEEEECCCCCCHHHEEEEEEEECCCCHHHHHHHHHHHH ATNDAGTTFEQGFESIKDCADCLVDHKDGTYTYTFKTNLTTADDAAGIVFDPALTQRIAM CCCCCCCHHHHHHHHHHHHHHHHEECCCCCEEEEEEECCCCCCCCCCEEECHHHHHHEEE EMQFEYDSGHELAENAHYDWIPATNATDGVETRDLVTLETCYSCHQPASLKAHGGRRLDM EEEEECCCCCHHHHCCCCCEECCCCCCCCCCCCCEEEHHHHHCCCCCCCEECCCCCEECH ENCQSCHNGLVTDPKAISVELGHMVHAIHMGENREGKDAEGNVVPMPYTIAGYGGDHAFD HHHHHHHCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEEECCEEEEECCCCCCCC YPAFPTKPVMDCTTCHVEDETLADKDLWLANANTNSCTGCHTDSPAQHKSDKNPELACTD CCCCCCCCCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCHHCCCCCCCCEEECC CHQVDHRKFNKPYESAAAYDVKFENVKVENGAISFEAKALDSEGAIVSGLSHKVYKYTAP HHHHHHHHCCCCHHHCCEEEEEEEEEEEECCEEEEEEEECCCCCCEEECCCCCEEEEECC VVQVSWNVENDGAIGDATADSSPWAREIEFLRPTTTNPTPDHVLPDNGVMTVDTKDMGIP EEEEEEECCCCCCCCCCCCCCCCHHHHHHEECCCCCCCCCCCCCCCCCEEEECCCCCCCC DGVSVELMPIFSICFDAQGVDIDCASDKVAGSAYIKSEPHRINMPTDDKGDVVARRAILD CCCCEEEEEHHHHHCCCCCCEEECCCCCCCCCEEECCCCCEECCCCCCCCCHHHHHHHHH EAKCRDCHSAEIRHKDNGLVACEACHTSDQGLQDDTVDGVKQFRGAGFAWKVHKASGHYM HHHCCCCCCCCEEECCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCC NKKYGGSGTVMKTDCATCHVTDESGNVDGIELGRASEGRTYVFPTTKTDGTAMYASADAG CCEECCCCCEEEECCCEEEEECCCCCCCCEEECCCCCCCEEEEECCCCCCCEEEEECCCC ACMTCHWGHESDAMLSHFKSNGGYYGPDKADAIKGTAEEACAVCHSPAKLMEVHNK CEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHCCCHHHHHHHHCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA