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The map label for this gene is ygdH [H]

Identifier: 157962793

GI number: 157962793

Start: 3645507

End: 3646859

Strand: Direct

Name: ygdH [H]

Synonym: Spea_2975

Alternate gene names: 157962793

Gene position: 3645507-3646859 (Clockwise)

Preceding gene: 157962792

Following gene: 157962794

Centisome position: 70.45

GC content: 45.45

Gene sequence:

>1353_bases
ATGATAGTAAAAATAAGCCCAAGAGGAAGCCTAGATCAACTTTCGCAACTGGAAGTTGATAGACTAAAACAGAACGCTAA
AAGTGAGCTTTATCAGCTCTACCGCAACTGCTCACTCGCCGTACTCGCATCGGGCCTTAAAAGCGATAATGCCCAGGGAC
TTTTCAACCGCTTTAGTGACTTTAATATTAATGTCTTACGCCGTGAGCGTGGCATTAAAATTGAGTTGACCAACCCACCG
GAAGAAGCCTTCGTGGACGGCGAGATTATCGCAGGGATCCAGGAGCACCTATTTGCGGTACTTAGGGATATCGTTTATAT
CAACGATAAGTACGATAACCTTAAACATATCAACTTAACGAATGCCAGTCATATCACCAACGTTGTATTTGATATCTTAC
GTAACGCCCGCTCAATGCCGATGCTTGATCCTAATATTGTCGTCTGCTGGGGCGGACACAGTATCAATCAAATAGAATAT
CAATACACCCGTGAAGTCGGTTATGAGCTCGGGTTACGCCAGCTAGATATCTGTACAGGTTGTGGACCTGGCGCGATGGA
AGGACCAATGAAAGGTGCCGCCATTGGCCATGCCAAACAGAGAGTGAACCTCGCCCGATATATCGGTCTTACCGAGCCAA
GTATTATTGCAGCTGAGCCACCAAATCAGATTGTGAATGAGTTAGTCATTCTGCCTGATATTGAAAAGCGCTTAGAGGCC
TTTGTTAGGCTGGGACATGGGATTATTATCTTCCCAGGTGGTGCAGGGACAGCGGAAGAGCTACTTTACCTCCTGGGTAT
TTTACTCAACAAAGATAACCAAGATATCCCCTTCCCTCTAGTGCTAACAGGCCCTAAAGAGAGTGAAGAATACTTCTTAC
GTATCGATGAGTTTGTCGGCGCCACATTAGGTGAAGAAGCACAAAGCAAATACCAGATCGTTATTGACGACCCGGTCAAG
GTCGCTCGAATACAGAAACAAGCTATGGAGCAGATCAAGACCTTCCGTAGGGAAAATGGCGACTCATATCAGTATCAGTG
GTCTTTAAAAATTGAACCTGAGTTTCAGCTTCCATTTGAGCCAACCCATGAGGTCATGAGTAACCTAGATCTGTACTTTC
AGCCGAATAAAGCAGAGTTAGCCGCTAACTTGCGTAAAGCATTTTCTGGTATCGTGGCCGGTAATGTTAAAATGGATACC
ATTAAGGCAATCGAAGCCAAGGGCCCCTTCGAAATCAAAGGAGATCCTGAGCTGATGCGATTGATGGACGACCTTTTAGG
CGCCTTTGTTAGCCAACAACGAATGAAGTTACCGGGAAGCGAATACGTTCCCTGCTACAAAGTCATAAAGTAG

Upstream 100 bases:

>100_bases
TAGGGTCATCATTGACTTCTAAGTTTCTCCCCTTGTGATAACACCCGTTACCACTCTCTCTTTAAGGGACAGCTTGCTTA
TCACTGCTTAAGGAGTTGCT

Downstream 100 bases:

>100_bases
AACGAATCTGATGTTACAGGTAAGCGAATACGTTCCCTGTTATGAAAGCTATAAAGTGGAAAGTCGTAGAGTATTAAATG
AATAAACTGCTAATTATCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MIVKISPRGSLDQLSQLEVDRLKQNAKSELYQLYRNCSLAVLASGLKSDNAQGLFNRFSDFNINVLRRERGIKIELTNPP
EEAFVDGEIIAGIQEHLFAVLRDIVYINDKYDNLKHINLTNASHITNVVFDILRNARSMPMLDPNIVVCWGGHSINQIEY
QYTREVGYELGLRQLDICTGCGPGAMEGPMKGAAIGHAKQRVNLARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLEA
FVRLGHGIIIFPGGAGTAEELLYLLGILLNKDNQDIPFPLVLTGPKESEEYFLRIDEFVGATLGEEAQSKYQIVIDDPVK
VARIQKQAMEQIKTFRRENGDSYQYQWSLKIEPEFQLPFEPTHEVMSNLDLYFQPNKAELAANLRKAFSGIVAGNVKMDT
IKAIEAKGPFEIKGDPELMRLMDDLLGAFVSQQRMKLPGSEYVPCYKVIK

Sequences:

>Translated_450_residues
MIVKISPRGSLDQLSQLEVDRLKQNAKSELYQLYRNCSLAVLASGLKSDNAQGLFNRFSDFNINVLRRERGIKIELTNPP
EEAFVDGEIIAGIQEHLFAVLRDIVYINDKYDNLKHINLTNASHITNVVFDILRNARSMPMLDPNIVVCWGGHSINQIEY
QYTREVGYELGLRQLDICTGCGPGAMEGPMKGAAIGHAKQRVNLARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLEA
FVRLGHGIIIFPGGAGTAEELLYLLGILLNKDNQDIPFPLVLTGPKESEEYFLRIDEFVGATLGEEAQSKYQIVIDDPVK
VARIQKQAMEQIKTFRRENGDSYQYQWSLKIEPEFQLPFEPTHEVMSNLDLYFQPNKAELAANLRKAFSGIVAGNVKMDT
IKAIEAKGPFEIKGDPELMRLMDDLLGAFVSQQRMKLPGSEYVPCYKVIK
>Mature_450_residues
MIVKISPRGSLDQLSQLEVDRLKQNAKSELYQLYRNCSLAVLASGLKSDNAQGLFNRFSDFNINVLRRERGIKIELTNPP
EEAFVDGEIIAGIQEHLFAVLRDIVYINDKYDNLKHINLTNASHITNVVFDILRNARSMPMLDPNIVVCWGGHSINQIEY
QYTREVGYELGLRQLDICTGCGPGAMEGPMKGAAIGHAKQRVNLARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLEA
FVRLGHGIIIFPGGAGTAEELLYLLGILLNKDNQDIPFPLVLTGPKESEEYFLRIDEFVGATLGEEAQSKYQIVIDDPVK
VARIQKQAMEQIKTFRRENGDSYQYQWSLKIEPEFQLPFEPTHEVMSNLDLYFQPNKAELAANLRKAFSGIVAGNVKMDT
IKAIEAKGPFEIKGDPELMRLMDDLLGAFVSQQRMKLPGSEYVPCYKVIK

Specific function: Unknown

COG id: COG1611

COG function: function code R; Predicted Rossmann fold nucleotide-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LOG family [H]

Homologues:

Organism=Escherichia coli, GI1789159, Length=452, Percent_Identity=63.9380530973451, Blast_Score=601, Evalue=1e-173,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021826
- InterPro:   IPR005269 [H]

Pfam domain/function: PF11892 DUF3412; PF03641 Lysine_decarbox [H]

EC number: NA

Molecular weight: Translated: 50596; Mature: 50596

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVKISPRGSLDQLSQLEVDRLKQNAKSELYQLYRNCSLAVLASGLKSDNAQGLFNRFSD
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHCC
FNINVLRRERGIKIELTNPPEEAFVDGEIIAGIQEHLFAVLRDIVYINDKYDNLKHINLT
CCEEEEEECCCCEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEC
NASHITNVVFDILRNARSMPMLDPNIVVCWGGHSINQIEYQYTREVGYELGLRQLDICTG
CHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHEEHCCC
CGPGAMEGPMKGAAIGHAKQRVNLARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLEA
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHEEECCCHHHHHHH
FVRLGHGIIIFPGGAGTAEELLYLLGILLNKDNQDIPFPLVLTGPKESEEYFLRIDEFVG
HHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHEEEHHHHC
ATLGEEAQSKYQIVIDDPVKVARIQKQAMEQIKTFRRENGDSYQYQWSLKIEPEFQLPFE
CCCCHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC
PTHEVMSNLDLYFQPNKAELAANLRKAFSGIVAGNVKMDTIKAIEAKGPFEIKGDPELMR
CHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCCEEEHHHHEEECCCCEEECCCHHHHH
LMDDLLGAFVSQQRMKLPGSEYVPCYKVIK
HHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
>Mature Secondary Structure
MIVKISPRGSLDQLSQLEVDRLKQNAKSELYQLYRNCSLAVLASGLKSDNAQGLFNRFSD
CEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHCC
FNINVLRRERGIKIELTNPPEEAFVDGEIIAGIQEHLFAVLRDIVYINDKYDNLKHINLT
CCEEEEEECCCCEEEECCCCHHHCCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEEC
NASHITNVVFDILRNARSMPMLDPNIVVCWGGHSINQIEYQYTREVGYELGLRQLDICTG
CHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCHHEEHCCC
CGPGAMEGPMKGAAIGHAKQRVNLARYIGLTEPSIIAAEPPNQIVNELVILPDIEKRLEA
CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHEEECCCHHHHHHH
FVRLGHGIIIFPGGAGTAEELLYLLGILLNKDNQDIPFPLVLTGPKESEEYFLRIDEFVG
HHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHEEEHHHHC
ATLGEEAQSKYQIVIDDPVKVARIQKQAMEQIKTFRRENGDSYQYQWSLKIEPEFQLPFE
CCCCHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCC
PTHEVMSNLDLYFQPNKAELAANLRKAFSGIVAGNVKMDTIKAIEAKGPFEIKGDPELMR
CHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCCEEEHHHHEEECCCCEEECCCHHHHH
LMDDLLGAFVSQQRMKLPGSEYVPCYKVIK
HHHHHHHHHHHHHHHCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]